Rmu_sc0004742.1_g000012

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004742.1
N/A
Physical Location & Seq
Forward (+)
51726 .. 52136
411 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
atgtcaaccaccgtcccacccgtcctctcgatctccaccacctctgtcgccgccgccggatccatcgagtccctggccttccgctccttcatcaaccacatcaccgacaccgtctgcaacgacctctcccagcgccgctcctgggccgagcttgccgaccgctccgccttcgccaagcccgagtccttctccgacgccaccctccgcgtccgcaagaactactcctacttccgtgtcaactacctcgccgtcgtcgccctcatcgtcgccgtctccctcttcacccacccattctccctcggcctcctcgcctgtcacaccccgaattttgaaataaggattcaaatccggaacatgactaataacaatacaaataacgttctgaatttctctctcagaaacaaccactag

Protein Analysis

136

Amino Acids

15.18

Weight (kDa)

9.58

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 41 - 105 3.4e-22 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 84, 138, 162
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 8 cut(s) 51, 54, 82, 136, 160, 165, 205, 211
AclI AACGTT 1 cut(s) 378
AclWI GGATC 2 cut(s) 54, 67
AcsI RAATTY 2 cut(s) 325, 385
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 332, 344
AjnI CCWGG 2 cut(s) 72, 140
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 54, 67
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 3 cut(s) 75, 144, 301
ApoI RAATTY 2 cut(s) 325, 385
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 94, 274
AvaI CYCGRG 1 cut(s) 179
BamHI GGATCC 1 cut(s) 59
BccI CCATC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 233, 254
BciT130I CCWGG 2 cut(s) 74, 142
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 3 cut(s) 51, 54, 136
BlsI GCNGC 3 cut(s) 52, 55, 137
Bme1390I CCNGG 2 cut(s) 74, 142
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 74, 142
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 72, 141, 298
BsaWI WCCGGW 1 cut(s) 348
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 2 cut(s) 74, 142
BseDI CCNNGG 3 cut(s) 72, 141, 298
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 409
BseRI GAGGAG 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 77, 146, 303
BsiEI CGRYCG 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 57, 349
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 3 cut(s) 77, 146, 303
BsoBI CYCGRG 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 30, 59
BspACI CCGC 8 cut(s) 51, 54, 82, 136, 160, 165, 205, 211
BspANI GGCC 3 cut(s) 77, 146, 303
BspCNI CTCAG 1 cut(s) 408
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 54, 67
BsrBI CCGCTC 3 cut(s) 84, 138, 162
BssECI CCNNGG 3 cut(s) 72, 141, 298
BssMI GATC 2 cut(s) 30, 59
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 74, 142
Bst4CI ACNGT 2 cut(s) 13, 112
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 33, 62
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 30, 59
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 152, 254
BstNI CCWGG 2 cut(s) 74, 142
BstSCI CCNGG 2 cut(s) 72, 140
BstUI CGCG 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 3 cut(s) 77, 146, 303
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 2 cut(s) 196, 203
CviAII CATG 1 cut(s) 355
CviJI RGCY 5 cut(s) 77, 146, 151, 178, 303
CviKI_1 RGCY 5 cut(s) 77, 146, 151, 178, 303
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 32, 61
DpnII GATC 2 cut(s) 30, 59
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 72, 140
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 358
FaiI YATR 1 cut(s) 356
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 51, 54, 136
Fsp4HI GCNGC 3 cut(s) 51, 54, 136
FspBI CTAG 1 cut(s) 409
GlaI GCGC 1 cut(s) 134
GluI GCNGC 3 cut(s) 51, 54, 136
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 77, 146, 303
HapII CCGG 2 cut(s) 57, 349
HgaI GACGC 2 cut(s) 196, 203
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 2 cut(s) 6, 238
HindII GTYRAC 2 cut(s) 6, 238
HinfI GANTC 3 cut(s) 68, 182, 340
HpaII CCGG 2 cut(s) 57, 349
HphI GGTGA 2 cut(s) 94, 274
Hpy166II GTNNAC 2 cut(s) 6, 238
Hpy188I TCNGA 3 cut(s) 193, 384, 398
Hpy188III TCNNGA 2 cut(s) 28, 349
Hpy8I GTNNAC 2 cut(s) 6, 238
Hpy99I CGWCG 4 cut(s) 197, 254, 257, 269
HpyAV CCTTC 4 cut(s) 88, 97, 178, 196
HpyCH4III ACNGT 2 cut(s) 13, 112
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 254
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 348
Kzo9I GATC 2 cut(s) 30, 59
LmnI GCTCC 3 cut(s) 89, 143, 167
LpnPI CCDG 8 cut(s) 59, 70, 86, 127, 143, 154, 325, 362
MaeI CTAG 1 cut(s) 409
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 32, 61
MbiI CCGCTC 3 cut(s) 84, 138, 162
MboI GATC 2 cut(s) 30, 59
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 59
MluCI AATT 2 cut(s) 325, 385
MlyI GAGTC 2 cut(s) 77, 191
MmeI TCCRAC 1 cut(s) 216
MroI TCCGGA 1 cut(s) 348
MspI CCGG 2 cut(s) 57, 349
MspR9I CCNGG 2 cut(s) 74, 142
MvaI CCWGG 2 cut(s) 74, 142
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 152, 254
NdeII GATC 2 cut(s) 30, 59
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 2 cut(s) 172, 279
NmuCI GTSAC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 261
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 52, 55, 137
PleI GAGTC 2 cut(s) 76, 190
PpsI GAGTC 2 cut(s) 76, 190
Psp1406I AACGTT 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 72, 140
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 72, 140
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 144
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 110
SatI GCNGC 3 cut(s) 51, 54, 136
Sau3AI GATC 2 cut(s) 30, 59
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 2 cut(s) 77, 191
ScrFI CCNGG 2 cut(s) 74, 142
SetI ASST 5 cut(s) 44, 126, 153, 246, 381
Sse9I AATT 2 cut(s) 325, 385
SsiI CCGC 8 cut(s) 51, 54, 82, 136, 160, 165, 205, 211
SspMI CTAG 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 72, 140
TaaI ACNGT 2 cut(s) 13, 112
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 29, 66
TasI AATT 2 cut(s) 325, 385
TauI GCSGC 3 cut(s) 53, 56, 138
TfiI GAWTC 1 cut(s) 340
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 221
Tth111I GACNNNGTC 1 cut(s) 110
XapI RAATTY 2 cut(s) 325, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.