Rmu_sc0004759.1_g000023

domain in transcription factors and synapse-associated proteins

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004759.1
N/A
Physical Location & Seq
Forward (+)
92304 .. 93511
1208 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atggaagacctgtggaagcgagccaagagcttcgcggaagaagccgccaagaaatcccagacaatcaccacctcctccgcctccgccaaaatctccgacttagtctccgagaccgccaagcgatcccgcgactctccaacctctccctcgtcaactcctcctccgttgaagctcaaggaagcagagcaattggaagctgataaagcgaagcaaacacctgttgttggagaggctgataaagcagaaggaagtgaaacaaacaagaagagcttaacttccaaatcttcatcaactgagcaggacttggatacattccttttgggggatcttgaagacagcgatgggggtcaagatgatgggaacgacaattttgatgatgatttcgacaagattggcgattcggatgttgatgatgaaaagcatgtgaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

4.48

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 35, 129
AciI CCGC 6 cut(s) 35, 45, 78, 84, 114, 127
AclWI GGATC 2 cut(s) 117, 333
AfiI CCNNNNNNNGG 2 cut(s) 224, 322
AgsI TTSAA 2 cut(s) 169, 332
AluBI AGCT 4 cut(s) 30, 172, 197, 270
AluI AGCT 4 cut(s) 30, 172, 197, 270
Alw26I GTCTC 2 cut(s) 104, 109
AlwI GGATC 2 cut(s) 117, 333
AsuHPI GGTGA 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 12, 339
BccI CCATC 2 cut(s) 335, 350
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 104, 109
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 12, 339
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 104
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 322
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 224, 322
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 3 cut(s) 64, 147, 150
Bsh1236I CGCG 2 cut(s) 35, 129
BslI CCNNNNNNNGG 2 cut(s) 224, 322
BsmAI GTCTC 2 cut(s) 104, 109
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 122, 325
BspACI CCGC 6 cut(s) 35, 45, 78, 84, 114, 127
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 2 cut(s) 35, 129
BspPI GGATC 2 cut(s) 117, 333
BspQI GCTCTTC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 104
BssMI GATC 2 cut(s) 122, 325
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 100, 294
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 2 cut(s) 35, 129
BstKTI GATC 2 cut(s) 125, 328
BstMAI GTCTC 2 cut(s) 104, 109
BstMBI GATC 2 cut(s) 122, 325
BstMWI GCNNNNNNNGC 3 cut(s) 41, 203, 239
BstNSI RCATGY 1 cut(s) 425
BstUI CGCG 2 cut(s) 35, 129
BstV2I GAAGAC 2 cut(s) 12, 339
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuI GTATCC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 21
CviAII CATG 1 cut(s) 422
CviJI RGCY 7 cut(s) 23, 30, 44, 172, 197, 233, 270
CviKI_1 RGCY 7 cut(s) 23, 30, 44, 172, 197, 233, 270
DdeI CTNAG 2 cut(s) 100, 294
DpnI GATC 2 cut(s) 124, 327
DpnII GATC 2 cut(s) 122, 325
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 2 cut(s) 67, 73
Eco31I GGTCTC 1 cut(s) 104
FaeI CATG 1 cut(s) 425
FaiI YATR 1 cut(s) 423
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 1 cut(s) 421
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 425
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 2 cut(s) 131, 398
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 3 cut(s) 97, 109, 403
Hpy188III TCNNGA 2 cut(s) 329, 350
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 203, 239
HpyF3I CTNAG 2 cut(s) 100, 294
Hsp92II CATG 1 cut(s) 425
Kzo9I GATC 2 cut(s) 122, 325
LguI GCTCTTC 1 cut(s) 260
LpnPI CCDG 4 cut(s) 23, 71, 231, 284
MalI GATC 2 cut(s) 124, 327
MboI GATC 2 cut(s) 122, 325
MboII GAAGA 5 cut(s) 17, 50, 276, 277, 344
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 188, 367
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 3 cut(s) 120, 161, 205
MnlI CCTC 8 cut(s) 82, 85, 91, 151, 157, 168, 171, 223
MseI TTAA 1 cut(s) 272
MunI CAATTG 1 cut(s) 188
MvnI CGCG 2 cut(s) 35, 129
MwoI GCNNNNNNNGC 3 cut(s) 41, 203, 239
NdeII GATC 2 cut(s) 122, 325
NlaIII CATG 1 cut(s) 425
NspI RCATGY 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 398
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 122, 325
SchI GAGTC 1 cut(s) 125
SetI ASST 8 cut(s) 12, 32, 74, 143, 174, 199, 220, 272
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 188, 367
SsiI CCGC 6 cut(s) 35, 45, 78, 84, 114, 127
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 188, 367
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 276, 429
TspGWI ACGGA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 101
XceI RCATGY 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.