Rmu_sc0004760.1_g000014

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004760.1
N/A
Physical Location & Seq
Reverse (-)
72045 .. 76133
4089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
atgtgggactatgtgcttctattcccagcatctggagcttctgatgctaacttggcgcggcgcgttagctgtgatctggaggtgatcccgggctcgggcagtagcccgcctggctgtgtctccgcaggtcacccacttggtgagattcgatacctctggcggtacaatgagcctgagcttataaggccgggcctgtcgggctttaaaccctccgccctagccctgccttgggcccaatgggcaaggtcaagatggaacaatggctcaaggctcatctcagtcccaagtgacatcgtctccactacctcaccccccggcgtcatggctcctcgtggtttagctgcttccacagttggaatgcccagccgtcgtatcggtggaggcggcaactccatctctagaggcatgggcagcagcggcggtggctctggtgccggaaacaacatactcaggttctacactgacgactctcctggcttgaagatctcccccaccgtcatgctcgtcatgagcctatgcttcatcggcttcgtcactaccctccacgtcttcagcaagctctacctccaccaatccaccaaaggagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

196

Amino Acids

20.62

Weight (kDa)

9.77

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 146 - 184 7.5e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 32
AccII CGCG 2 cut(s) 58, 63
AciI CCGC 8 cut(s) 58, 107, 123, 160, 213, 384, 417, 420
AclWI GGATC 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 5 cut(s) 32, 94, 95, 228, 229
AgsI TTSAA 1 cut(s) 481
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 2 cut(s) 109, 472
AluBI AGCT 6 cut(s) 38, 69, 178, 341, 559, 587
AluI AGCT 6 cut(s) 38, 69, 178, 341, 559, 587
Alw26I GTCTC 2 cut(s) 124, 301
AlwI GGATC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 2 cut(s) 88, 94
AoxI GGCC 3 cut(s) 185, 190, 231
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 341, 411, 414
AspLEI GCGC 2 cut(s) 58, 63
AspS9I GGNCC 3 cut(s) 190, 231, 232
AsuC2I CCSGG 4 cut(s) 89, 90, 189, 315
AsuHPI GGTGA 4 cut(s) 94, 122, 152, 300
AvaI CYCGRG 2 cut(s) 88, 94
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 2 cut(s) 95, 235
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 328, 423, 426
BccI CCATC 2 cut(s) 246, 401
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 2 cut(s) 111, 474
BcnI CCSGG 4 cut(s) 89, 90, 189, 315
BcoDI GTCTC 2 cut(s) 124, 301
BfaI CTAG 2 cut(s) 218, 399
BfuAI ACCTGC 1 cut(s) 116
BglI GCCNNNNNGGC 3 cut(s) 111, 198, 239
BglII AGATCT 1 cut(s) 483
BisI GCNGC 6 cut(s) 59, 342, 385, 412, 415, 418
BlsI GCNGC 6 cut(s) 60, 343, 386, 413, 416, 419
Bme1390I CCNGG 6 cut(s) 89, 90, 111, 189, 315, 474
BmeT110I CYCGRG 2 cut(s) 88, 94
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 190, 231, 232
BmiI GGNNCC 3 cut(s) 233, 327, 433
BmrFI CCNGG 6 cut(s) 89, 90, 111, 189, 315, 474
BmsI GCATC 2 cut(s) 34, 38
BpiI GAAGAC 1 cut(s) 541
BpmI CTGGAG 2 cut(s) 54, 98
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 4 cut(s) 89, 90, 189, 315
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 88, 227, 313
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 94, 95, 228, 229
BseBI CCWGG 2 cut(s) 111, 474
BseDI CCNNGG 3 cut(s) 88, 227, 313
BseLI CCNNNNNNNGG 5 cut(s) 32, 94, 95, 228, 229
BseMII CTCAG 3 cut(s) 165, 291, 463
BseRI GAGGAG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 328, 423, 426
BseYI CCCAGC 2 cut(s) 25, 362
Bsh1236I CGCG 2 cut(s) 58, 63
BshFI GGCC 3 cut(s) 187, 192, 233
BshNI GGYRCC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 88, 94
BsiSI CCGG 4 cut(s) 89, 188, 315, 435
BslFI GGGAC 2 cut(s) 20, 266
BslI CCNNNNNNNGG 5 cut(s) 32, 94, 95, 228, 229
BsmAI GTCTC 2 cut(s) 124, 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 2 cut(s) 20, 266
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 3 cut(s) 187, 192, 233
BsoBI CYCGRG 2 cut(s) 88, 94
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 95, 235
Bsp143I GATC 3 cut(s) 73, 84, 483
BspACI CCGC 8 cut(s) 58, 107, 123, 160, 213, 384, 417, 420
BspANI GGCC 3 cut(s) 187, 192, 233
BspCNI CTCAG 3 cut(s) 166, 290, 462
BspFNI CGCG 2 cut(s) 58, 63
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 3 cut(s) 233, 327, 433
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 88, 227, 313
BssMI GATC 3 cut(s) 73, 84, 483
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 111, 474
Bst4CI ACNGT 2 cut(s) 352, 496
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 107, 557
BstDEI CTNAG 3 cut(s) 174, 277, 449
BstEII GGTNACC 1 cut(s) 128
BstFNI CGCG 2 cut(s) 58, 63
BstHHI GCGC 2 cut(s) 58, 63
BstKTI GATC 3 cut(s) 76, 87, 486
BstMAI GTCTC 2 cut(s) 124, 301
BstMBI GATC 3 cut(s) 73, 84, 483
BstNI CCWGG 2 cut(s) 111, 474
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 6 cut(s) 87, 88, 109, 187, 313, 472
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 2 cut(s) 58, 63
BstV1I GCAGC 3 cut(s) 328, 423, 426
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 3 cut(s) 187, 192, 233
BtrI CACGTC 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 107, 557
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 507
CfoI GCGC 2 cut(s) 58, 63
Cfr13I GGNCC 3 cut(s) 190, 231, 232
Cfr9I CCCGGG 1 cut(s) 88
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 322, 406, 499, 508
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 3 cut(s) 174, 277, 449
DpnI GATC 3 cut(s) 75, 86, 485
DpnII GATC 3 cut(s) 73, 84, 483
DraI TTTAAA 1 cut(s) 205
DraIII CACNNNGTG 1 cut(s) 140
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 95, 235
Eco57I CTGAAG 1 cut(s) 535
Eco88I CYCGRG 2 cut(s) 88, 94
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 109, 472
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 95, 235
ErhI CCWWGG 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 4 cut(s) 325, 409, 502, 511
FaiI YATR 8 cut(s) 12, 182, 323, 407, 446, 500, 509, 517
FaqI GGGAC 2 cut(s) 20, 266
FatI CATG 4 cut(s) 321, 405, 498, 507
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 59, 342, 385, 412, 415, 418
FriOI GRGCYC 2 cut(s) 95, 235
Fsp4HI GCNGC 6 cut(s) 59, 342, 385, 412, 415, 418
FspBI CTAG 2 cut(s) 218, 399
GlaI GCGC 2 cut(s) 57, 62
GluI GCNGC 6 cut(s) 59, 342, 385, 412, 415, 418
GsaI CCCAGC 2 cut(s) 29, 366
GsuI CTGGAG 2 cut(s) 54, 98
HaeIII GGCC 3 cut(s) 187, 192, 233
HapII CCGG 4 cut(s) 89, 188, 315, 435
HgaI GACGC 1 cut(s) 307
HhaI GCGC 2 cut(s) 58, 63
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 4 cut(s) 325, 409, 502, 511
Hin6I GCGC 2 cut(s) 56, 61
HinP1I GCGC 2 cut(s) 56, 61
HinfI GANTC 2 cut(s) 145, 467
HpaII CCGG 4 cut(s) 89, 188, 315, 435
HphI GGTGA 4 cut(s) 94, 122, 152, 300
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 5 cut(s) 33, 77, 249, 399, 508
Hpy99I CGWCG 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 352, 496
HpyCH4IV ACGT 1 cut(s) 546
HpyF3I CTNAG 3 cut(s) 174, 277, 449
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 4 cut(s) 325, 409, 502, 511
HspAI GCGC 2 cut(s) 56, 61
Kzo9I GATC 3 cut(s) 73, 84, 483
LmnI GCTCC 3 cut(s) 35, 331, 584
Lsp1109I GCAGC 3 cut(s) 328, 423, 426
LweI GCATC 2 cut(s) 34, 38
MaeI CTAG 2 cut(s) 218, 399
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 3 cut(s) 128, 287, 532
MalI GATC 3 cut(s) 75, 86, 485
MboI GATC 3 cut(s) 73, 84, 483
MboII GAAGA 2 cut(s) 493, 541
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 95, 235
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 9 cut(s) 73, 164, 220, 316, 339, 374, 395, 551, 575
MseI TTAA 2 cut(s) 204, 589
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 4 cut(s) 89, 188, 315, 435
MspR9I CCNGG 6 cut(s) 89, 90, 111, 189, 315, 474
MteI GCGCNGCGC 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 2 cut(s) 111, 474
MvnI CGCG 2 cut(s) 58, 63
NciI CCSGG 4 cut(s) 89, 90, 189, 315
NdeII GATC 3 cut(s) 73, 84, 483
NlaIII CATG 4 cut(s) 325, 409, 502, 511
NlaIV GGNNCC 3 cut(s) 233, 327, 433
NmuCI GTSAC 3 cut(s) 128, 287, 532
PagI TCATGA 1 cut(s) 507
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 6 cut(s) 60, 343, 386, 413, 416, 419
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PsiI TTATAA 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 109, 472
PspEI GGTNACC 1 cut(s) 128
PspFI CCCAGC 2 cut(s) 25, 362
PspGI CCWGG 2 cut(s) 109, 472
PspN4I GGNNCC 3 cut(s) 233, 327, 433
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 190, 231, 232
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 483
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 204, 589
SatI GCNGC 6 cut(s) 59, 342, 385, 412, 415, 418
Sau3AI GATC 3 cut(s) 73, 84, 483
Sau96I GGNCC 3 cut(s) 190, 231, 232
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 6 cut(s) 89, 90, 111, 189, 315, 474
SduI GDGCHC 2 cut(s) 95, 235
SfaNI GCATC 2 cut(s) 34, 38
SmaI CCCGGG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SsiI CCGC 8 cut(s) 58, 107, 123, 160, 213, 384, 417, 420
SspMI CTAG 2 cut(s) 218, 399
StyD4I CCNGG 6 cut(s) 87, 88, 109, 187, 313, 472
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 352, 496
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 148
TauI GCSGC 3 cut(s) 61, 387, 420
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 204, 589
Tru9I TTAA 2 cut(s) 204, 589
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 3 cut(s) 128, 287, 532
TseI GCWGC 3 cut(s) 341, 411, 414
Tsp45I GTSAC 3 cut(s) 128, 287, 532
TspDTI ATGAA 1 cut(s) 511
TspMI CCCGGG 1 cut(s) 88
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 398
XmaI CCCGGG 1 cut(s) 88
XspI CTAG 2 cut(s) 218, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.