Rmu_sc0004765.1_g000002

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004765.1
N/A
Physical Location & Seq
Forward (+)
655 .. 3115
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 921 bp
atgtgtcaaggtggacaaagtagggacgtcctgaataagcaggttaaagcagcaatggaatcaaagccgtcgcgaatttcagtgatacaaagagcagaggaaatttctcgactcgatgaaaacataaaggacatgaacatatccgacttcttgtcaaaagccagcaacaaaaattgctcacggaattccaatattatctttagaaccacaactccagcatggccttcaatcgcgcgagactctggtatagttttcaaagacactgctatggaaagcctttggagacgctgctctggtatgttcttcggagacgctgctccggcatgtttgttcggcatgaagtctttaacacctgcaactaaaggaaatgctcatgagtttataccaagagtaaatggcctaccttgcttagactccaagttagcacaagctgaccatttcttcttcggagggcttcaccttgccggaaacacctcaaaccctcttggagttaaaatcacttcagtcaatgtggctcaaattccaggactcaacaccctcggcatctcacttgctcgtattgactatgcaccgtggggcgttacccctcctcacactcatccccgtgccactgaaattctaacagtcttggaaggccgtgttgctgttggttttgtgacctctaaccccgacaacaagctcatctctaaggtgctcaacaagggtgatgtgtttgttttccctgttgggctagttcactaccagcaaaatgtgggtaatggaactgccgtttcactctcttctctgagcagccaaaaccctggagtcatcactattgctaattcagtttttggagcgaatccctcaatttcggatgatgttctagccaaggcttttcaggtggacaaatccataattagtaatcttcaagcaaaattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

306

Amino Acids

32.87

Weight (kDa)

9.24

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 155 - 297 4.6e-49 Cupin
Cupin_2 PF07883 187 - 258 2.1e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 2 cut(s) 31, 361
AccII CGCG 3 cut(s) 73, 233, 235
AcsI RAATTY 6 cut(s) 75, 102, 184, 519, 615, 914
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 27
AgsI TTSAA 3 cut(s) 228, 256, 908
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 523, 799
AloI GAACNNNNNNTCC 2 cut(s) 196, 228
AluBI AGCT 2 cut(s) 431, 679
AluI AGCT 2 cut(s) 431, 679
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 3 cut(s) 231, 277, 303
AoxI GGCC 3 cut(s) 221, 397, 634
ApeKI GCWGC 4 cut(s) 50, 288, 314, 789
ApoI RAATTY 6 cut(s) 75, 102, 184, 519, 615, 914
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 449, 716
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 62, 275, 301, 801
BceAI ACGGC 3 cut(s) 52, 621, 752
BciT130I CCWGG 2 cut(s) 525, 801
BcoDI GTCTC 3 cut(s) 231, 277, 303
BfaI CTAG 2 cut(s) 731, 863
BfuAI ACCTGC 2 cut(s) 31, 361
BisI GCNGC 4 cut(s) 51, 289, 315, 790
BlsI GCNGC 4 cut(s) 52, 290, 316, 791
Bme1390I CCNGG 2 cut(s) 525, 801
BmeRI GACNNNNNGTC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 525, 801
BmsI GCATC 1 cut(s) 552
BpmI CTGGAG 2 cut(s) 198, 822
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 538, 572, 799, 867
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 525, 801
BseDI CCNNGG 4 cut(s) 538, 572, 799, 867
BseGI GGATG 2 cut(s) 598, 859
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 776
BseRI GAGGAG 1 cut(s) 579
BseXI GCAGC 4 cut(s) 62, 275, 301, 801
Bsh1236I CGCG 3 cut(s) 73, 233, 235
BshFI GGCC 3 cut(s) 223, 399, 636
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 2 cut(s) 320, 465
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 231, 277, 303
BsmBI CGTCTC 2 cut(s) 277, 303
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 3 cut(s) 223, 399, 636
Bsp1286I GDGCHC 1 cut(s) 696
Bsp68I TCGCGA 1 cut(s) 73
BspANI GGCC 3 cut(s) 223, 399, 636
BspCNI CTCAG 1 cut(s) 777
BspFNI CGCG 3 cut(s) 73, 233, 235
BspHI TCATGA 1 cut(s) 373
BspMI ACCTGC 2 cut(s) 31, 361
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 4 cut(s) 538, 572, 799, 867
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 867
Bst2UI CCWGG 2 cut(s) 525, 801
Bst4CI ACNGT 2 cut(s) 573, 625
Bst6I CTCTTC 1 cut(s) 784
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 409, 687, 785
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 598, 859
BstFNI CGCG 3 cut(s) 73, 233, 235
BstHHI GCGC 1 cut(s) 235
BstMAI GTCTC 3 cut(s) 231, 277, 303
BstMWI GCNNNNNNNGC 2 cut(s) 320, 405
BstNI CCWGG 2 cut(s) 525, 801
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 523, 799
BstUI CGCG 3 cut(s) 73, 233, 235
BstV1I GCAGC 4 cut(s) 62, 275, 301, 801
BstXI CCANNNNNNTGG 1 cut(s) 800
BsuRI GGCC 3 cut(s) 223, 399, 636
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 2 cut(s) 598, 859
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 87, 261, 609
BtuMI TCGCGA 1 cut(s) 73
BveI ACCTGC 2 cut(s) 31, 361
Cac8I GCNNGC 1 cut(s) 163
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 235
CseI GACGC 2 cut(s) 294, 320
CviAII CATG 5 cut(s) 133, 219, 324, 337, 374
DdeI CTNAG 3 cut(s) 409, 687, 785
DriI GACNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 784
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 867
Eco57I CTGAAG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 523, 799
EcoT14I CCWWGG 1 cut(s) 867
ErhI CCWWGG 1 cut(s) 867
Esp3I CGTCTC 2 cut(s) 277, 303
FaeI CATG 5 cut(s) 136, 222, 327, 340, 377
FaqI GGGAC 1 cut(s) 38
FatI CATG 5 cut(s) 132, 218, 323, 336, 373
Fnu4HI GCNGC 4 cut(s) 51, 289, 315, 790
FokI GGATG 2 cut(s) 585, 866
Fsp4HI GCNGC 4 cut(s) 51, 289, 315, 790
FspBI CTAG 2 cut(s) 731, 863
GlaI GCGC 1 cut(s) 234
GluI GCNGC 4 cut(s) 51, 289, 315, 790
GsuI CTGGAG 2 cut(s) 198, 822
HaeIII GGCC 3 cut(s) 223, 399, 636
HapII CCGG 2 cut(s) 320, 465
HgaI GACGC 2 cut(s) 294, 320
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 5 cut(s) 136, 222, 327, 340, 377
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 7 cut(s) 59, 111, 239, 413, 528, 804, 838
HpaII CCGG 2 cut(s) 320, 465
HphI GGTGA 2 cut(s) 449, 716
Hpy166II GTNNAC 3 cut(s) 14, 736, 883
Hpy188I TCNGA 5 cut(s) 145, 308, 449, 786, 853
Hpy188III TCNNGA 4 cut(s) 31, 72, 108, 374
Hpy8I GTNNAC 3 cut(s) 14, 736, 883
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 234, 626
HpyCH4III ACNGT 2 cut(s) 573, 625
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 356, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 405
HpyF3I CTNAG 3 cut(s) 409, 687, 785
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 5 cut(s) 136, 222, 327, 340, 377
HspAI GCGC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 322, 833
Lsp1109I GCAGC 4 cut(s) 62, 275, 301, 801
LweI GCATC 1 cut(s) 552
MaeI CTAG 2 cut(s) 731, 863
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 580, 655
MboII GAAGA 5 cut(s) 295, 433, 436, 771, 896
MhlI GDGCHC 1 cut(s) 696
MlyI GAGTC 5 cut(s) 105, 233, 407, 522, 813
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 9 cut(s) 91, 443, 484, 492, 548, 597, 600, 670, 853
MseI TTAA 3 cut(s) 45, 347, 492
MslI CAYNNNNRTG 2 cut(s) 266, 603
MspI CCGG 2 cut(s) 320, 465
MspR9I CCNGG 2 cut(s) 525, 801
MvaI CCWGG 2 cut(s) 525, 801
MvnI CGCG 3 cut(s) 73, 233, 235
MwoI GCNNNNNNNGC 2 cut(s) 320, 405
NlaIII CATG 5 cut(s) 136, 222, 327, 340, 377
NmeAIII GCCGAG 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 655
NruI TCGCGA 1 cut(s) 73
NspI RCATGY 1 cut(s) 327
PagI TCATGA 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 59, 838
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 4 cut(s) 52, 290, 316, 791
PleI GAGTC 5 cut(s) 105, 233, 407, 522, 812
PpsI GAGTC 5 cut(s) 105, 233, 407, 522, 812
Psp6I CCWGG 2 cut(s) 523, 799
PspGI CCWGG 2 cut(s) 523, 799
RruI TCGCGA 1 cut(s) 73
RseI CAYNNNNRTG 2 cut(s) 266, 603
SaqAI TTAA 3 cut(s) 45, 347, 492
SatI GCNGC 4 cut(s) 51, 289, 315, 790
SchI GAGTC 5 cut(s) 105, 233, 407, 522, 813
ScrFI CCNGG 2 cut(s) 525, 801
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 266, 603
SspI AATATT 1 cut(s) 193
SspMI CTAG 2 cut(s) 731, 863
StyD4I CCNGG 2 cut(s) 523, 799
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 2 cut(s) 573, 625
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 109, 114
TfiI GAWTC 2 cut(s) 59, 838
Tru1I TTAA 3 cut(s) 45, 347, 492
Tru9I TTAA 3 cut(s) 45, 347, 492
TscAI CASTG 3 cut(s) 87, 268, 616
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 4 cut(s) 50, 288, 314, 789
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 3 cut(s) 132, 149, 353
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 3 cut(s) 87, 268, 616
XapI RAATTY 6 cut(s) 75, 102, 184, 519, 615, 914
XceI RCATGY 1 cut(s) 327
XspI CTAG 2 cut(s) 731, 863
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.