Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004780.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7529 .. 9285

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggatcaaaaacttgaatccgaaagcagagtttgcgtcacgggagcttctggctttctggcatcttggcttattaagcgacttctcatgtcaggatatcatgtaactggaactgtcagagatccaggaaaccagaagaaattggcacatttgtggaggctggaaggagctaaagaaagactgagattggtgaaggctgatttagttgaagaaagtagctttgatgatgcaatcttcgggtgccatggtgtcttccactctgcttctcctgtacccaaactttcatctgatccaaagaaagaaatcctagaccccgctattgaaggcacgttgaatgtgcttcgttcatgtaagaagaatccatctctaaggcgtgtggttctcacctcatcttcttcagctgtaagggtgagagatggtgatgattttgaccccaatattccattggatgagtcatcttggagctctgtggaactctgccagaaactgcaggtacccttaacaaactactccatcagtctttccttgtttaagtttcagatctatagcaaagtttctgggtctcatggtgttggtctctacctatctcatttatctttaccttttagtagtgggcccttacagcccgatgataatggcgaaaaacatgttcttttgtgccgagttatattaggcaatgttgagaaagttgaggcagggtctcagcaatgctacccttctagtatggaattcgatactggtgtggatgatcctaggactcctacgcgttatgtggtatggcccactaatatgaataggcacgttctgccggagtgtgttgtgagctataaaccttctgatcatgtgccgggttctctgcctagaaagtaccatgttgcggaattgatttcgagggtcaggaattccctacccccttcaaaagttcagcaattgtcgaatctggtacatggtttaaaggttgggaagttagcaagaaatgatttctgcagacagtttcgattagttgttggggagcaattgctgcgttctgcaattcctgagatgcgtggctcggaacaaggttctacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0010015 GO:0010101 GO:0010102 GO:0010154 GO:0010228 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST WWE

Protein Analysis

356

Amino Acids

39.46

Weight (kDa)

8.82

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	8 - 89	9.5e-06	NmrA-like family
Epimerase	PF01370	11 - 135	2.5e-14	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	13 - 136	1.7e-11	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	13 - 132	1.7e-09	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	13 - 143	4.8e-08	Male sterility protein
NAD_binding_10	PF13460	15 - 138	1.4e-08	NAD(P)H-binding
RST	PF12174	293 - 348	3.7e-10	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	2 cut(s)	240, 493
AccII	CGCG	1 cut(s)	766
AciI	CCGC	2 cut(s)	315, 878
AclWI	GGATC	4 cut(s)	12, 116, 284, 743
AcsI	RAATTY	2 cut(s)	728, 901
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	4 cut(s)	273, 495, 869, 945
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflIII	ACRYGT	2 cut(s)	646, 764
AgsI	TTSAA	5 cut(s)	17, 209, 323, 334, 918
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	47, 170, 219, 401, 465, 825
AluI	AGCT	6 cut(s)	47, 170, 219, 401, 465, 825
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	3 cut(s)	567, 581, 705
AlwI	GGATC	4 cut(s)	12, 116, 284, 743
AlwNI	CAGNNNCTG	1 cut(s)	487
AoxI	GGCC	2 cut(s)	614, 779
ApaI	GGGCCC	1 cut(s)	618
ApeKI	GCWGC	1 cut(s)	1021
ApoI	RAATTY	2 cut(s)	728, 901
Asp718I	GGTACC	1 cut(s)	493
AspA2I	CCTAGG	1 cut(s)	752
AspS9I	GGNCC	3 cut(s)	614, 615, 780
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	4 cut(s)	202, 376, 421, 431
AvrII	CCTAGG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	618
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BanI	GGYRCC	2 cut(s)	240, 493
BanII	GRGCYC	2 cut(s)	467, 618
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	1 cut(s)	1008
BccI	CCATC	3 cut(s)	370, 410, 521
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	3 cut(s)	567, 581, 705
BfaI	CTAG	4 cut(s)	308, 720, 753, 861
BfmI	CTRYAG	3 cut(s)	488, 544, 985
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	1 cut(s)	1022
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	1 cut(s)	1023
Bme1390I	CCNGG	2 cut(s)	126, 849
BmgT120I	GGNCC	3 cut(s)	614, 615, 780
BmiI	GGNNCC	3 cut(s)	242, 495, 616
BmrFI	CCNGG	2 cut(s)	126, 849
BmsI	GCATC	3 cut(s)	71, 217, 1032
BpiI	GAAGAC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	849
BsaI	GGTCTC	3 cut(s)	567, 581, 705
BsaJI	CCNNGG	2 cut(s)	244, 752
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse1I	ACTGG	2 cut(s)	112, 742
Bse3DI	GCAATG	2 cut(s)	682, 713
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	244, 752
BseGI	GGATG	2 cut(s)	454, 751
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	2 cut(s)	682, 713
BseMII	CTCAG	3 cut(s)	173, 716, 1029
BseNI	ACTGG	2 cut(s)	112, 742
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	1008
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	2 cut(s)	616, 781
BshNI	GGYRCC	2 cut(s)	240, 493
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	809, 848
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	3 cut(s)	567, 581, 705
BsnI	GGCC	2 cut(s)	616, 781
Bso31I	GGTCTC	3 cut(s)	567, 581, 705
Bsp120I	GGGCCC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	467, 618
Bsp143I	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	315, 878
BspANI	GGCC	2 cut(s)	616, 781
BspCNI	CTCAG	3 cut(s)	174, 715, 1030
BspFNI	CGCG	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	242, 495, 616
BspMAI	CTGCAG	2 cut(s)	492, 989
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	4 cut(s)	12, 116, 284, 743
BspT107I	GGYRCC	2 cut(s)	240, 493
BspTNI	GGTCTC	3 cut(s)	567, 581, 705
BsrDI	GCAATG	2 cut(s)	682, 713
BsrI	ACTGG	2 cut(s)	112, 742
BssECI	CCNNGG	2 cut(s)	244, 752
BssMI	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
BssT1I	CCWWGG	2 cut(s)	244, 752
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	115, 993
BstAPI	GCANNNNNTGC	3 cut(s)	33, 805, 1021
BstDEI	CTNAG	5 cut(s)	182, 368, 702, 1038, 1068
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	454, 751
BstFNI	CGCG	1 cut(s)	766
BstKTI	GATC	6 cut(s)	7, 124, 292, 543, 751, 841
BstMAI	GTCTC	3 cut(s)	567, 581, 705
BstMBI	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 76, 622, 805, 1021
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	124, 847
BstSFI	CTRYAG	3 cut(s)	488, 544, 985
BstSLI	GKGCMC	1 cut(s)	618
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	1008
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	121, 540
BstYI	RGATCY	2 cut(s)	121, 540
BsuRI	GGCC	2 cut(s)	616, 781
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	454, 751
BveI	ACCTGC	1 cut(s)	481
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	614, 615, 780
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	272, 494, 868, 944
CviAII	CATG	9 cut(s)	88, 101, 245, 348, 566, 647, 842, 872, 947
CviQI	GTAC	4 cut(s)	272, 494, 868, 944
DdeI	CTNAG	5 cut(s)	182, 368, 702, 1038, 1068
DpnI	GATC	6 cut(s)	6, 123, 291, 542, 750, 840
DpnII	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
DraI	TTTAAA	1 cut(s)	954
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	244, 752
Eco24I	GRGCYC	2 cut(s)	467, 618
Eco31I	GGTCTC	3 cut(s)	567, 581, 705
Eco32I	GATATC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRI	GAATTC	2 cut(s)	728, 901
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	244, 752
EcoT38I	GRGCYC	2 cut(s)	467, 618
ErhI	CCWWGG	2 cut(s)	244, 752
FaeI	CATG	9 cut(s)	91, 104, 248, 351, 569, 650, 845, 875, 950
FatI	CATG	9 cut(s)	87, 100, 244, 347, 565, 646, 841, 871, 946
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	1 cut(s)	1022
FokI	GGATG	2 cut(s)	461, 758
FriOI	GRGCYC	2 cut(s)	467, 618
Fsp4HI	GCNGC	1 cut(s)	1022
FspBI	CTAG	4 cut(s)	308, 720, 753, 861
GluI	GCNGC	1 cut(s)	1022
HaeIII	GGCC	2 cut(s)	616, 781
HapII	CCGG	2 cut(s)	809, 848
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	9 cut(s)	91, 104, 248, 351, 569, 650, 845, 875, 950
HinfI	GANTC	5 cut(s)	17, 358, 452, 757, 937
HpaII	CCGG	2 cut(s)	809, 848
HphI	GGTGA	4 cut(s)	202, 376, 421, 431
Hpy188I	TCNGA	6 cut(s)	22, 119, 289, 540, 838, 1054
Hpy188III	TCNNGA	3 cut(s)	93, 898, 1037
HpyAV	CCTTC	6 cut(s)	158, 187, 317, 726, 843, 924
HpyCH4III	ACNGT	2 cut(s)	115, 993
HpyCH4IV	ACGT	2 cut(s)	329, 801
HpyCH4V	TGCA	4 cut(s)	230, 490, 987, 1031
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 76, 622, 805, 1021
HpyF3I	CTNAG	5 cut(s)	182, 368, 702, 1038, 1068
HpySE526I	ACGT	2 cut(s)	329, 801
Hsp92II	CATG	9 cut(s)	91, 104, 248, 351, 569, 650, 845, 875, 950
KpnI	GGTACC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
LmnI	GCTCC	4 cut(s)	44, 167, 462, 1012
Lsp1109I	GCAGC	1 cut(s)	1008
LweI	GCATC	3 cut(s)	71, 217, 1032
MaeI	CTAG	4 cut(s)	308, 720, 753, 861
MaeII	ACGT	2 cut(s)	329, 801
MaeIII	GTNAC	2 cut(s)	37, 103
MalI	GATC	6 cut(s)	6, 123, 291, 542, 750, 840
MboI	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
MboII	GAAGA	7 cut(s)	148, 221, 226, 244, 367, 384, 387
MfeI	CAATTG	2 cut(s)	929, 1016
MflI	RGATCY	2 cut(s)	121, 540
MhlI	GDGCHC	2 cut(s)	467, 618
MluCI	AATT	7 cut(s)	140, 728, 881, 901, 929, 1016, 1032
MluI	ACGCGT	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	461, 751
MnlI	CCTC	4 cut(s)	150, 397, 685, 885
MseI	TTAA	4 cut(s)	75, 500, 531, 953
MslI	CAYNNNNRTG	2 cut(s)	151, 788
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	2 cut(s)	809, 848
MspR9I	CCNGG	2 cut(s)	126, 849
MunI	CAATTG	2 cut(s)	929, 1016
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	5 cut(s)	33, 76, 622, 805, 1021
NciI	CCSGG	1 cut(s)	849
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
NlaIII	CATG	9 cut(s)	91, 104, 248, 351, 569, 650, 845, 875, 950
NlaIV	GGNNCC	3 cut(s)	242, 495, 616
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	650
OliI	CACNNNNGTG	1 cut(s)	151
PciI	ACATGT	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	17, 358, 937
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	1023
PleI	GAGTC	2 cut(s)	460, 751
PpsI	GAGTC	2 cut(s)	460, 751
PscI	ACATGT	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	242, 495, 616
PspOMI	GGGCCC	1 cut(s)	614
PspPI	GGNCC	3 cut(s)	614, 615, 780
PstI	CTGCAG	2 cut(s)	492, 989
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	121, 540
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	4 cut(s)	273, 495, 869, 945
RsaNI	GTAC	4 cut(s)	272, 494, 868, 944
RseI	CAYNNNNRTG	2 cut(s)	151, 788
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	4 cut(s)	75, 500, 531, 953
SatI	GCNGC	1 cut(s)	1022
Sau3AI	GATC	6 cut(s)	4, 121, 289, 540, 748, 838
Sau96I	GGNCC	3 cut(s)	614, 615, 780
SchI	GAGTC	2 cut(s)	461, 751
ScrFI	CCNGG	2 cut(s)	126, 849
SduI	GDGCHC	2 cut(s)	467, 618
SfaNI	GCATC	3 cut(s)	71, 217, 1032
SfcI	CTRYAG	3 cut(s)	488, 544, 985
SmiMI	CAYNNNNRTG	2 cut(s)	151, 788
Sse9I	AATT	7 cut(s)	140, 728, 881, 901, 929, 1016, 1032
SsiI	CCGC	2 cut(s)	315, 878
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	4 cut(s)	308, 720, 753, 861
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	124, 847
StyI	CCWWGG	2 cut(s)	244, 752
TaaI	ACNGT	2 cut(s)	115, 993
TaiI	ACGT	2 cut(s)	332, 804
TaqI	TCGA	4 cut(s)	732, 890, 935, 997
TasI	AATT	7 cut(s)	140, 728, 881, 901, 929, 1016, 1032
TfiI	GAWTC	3 cut(s)	17, 358, 937
Tru1I	TTAA	4 cut(s)	75, 500, 531, 953
Tru9I	TTAA	4 cut(s)	75, 500, 531, 953
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	1021
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	273, 336, 806
XapI	RAATTY	2 cut(s)	728, 901
XceI	RCATGY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmaJI	CCTAGG	1 cut(s)	752
XspI	CTAG	4 cut(s)	308, 720, 753, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.