Rmu_sc0004820.1_g000011

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004820.1
N/A
Physical Location & Seq
Forward (+)
32682 .. 34260
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004820.1_g000011.1.cds

Sequence Viewer

Length: 612 bp
atgaagaagtccccgtcaaaaaagctcaagactccaaggaaggaggagaaattggtgaatggcttaccggaattcaccattgtggctggaggaggtcaatgtcgaaatgctttcacaaaacaactctacactcgttttgattgctttgcatgttcctctgtcatctttttcatcactctcacaaatcacaactttgatattgcttccttcctgaaactaactatagtggtaggagagatctttcttgctgcgttccttcaggtgttattcgacaggctagcctctcgtgacttcctcaaatttgcacggcagaaaggcattggcgagaagcttgaaaaatggagtcaaacattgtttgcaattcgagccgtgttgtatgacgccaaggagaagccactgataggcatgtcagtgaaggagtcgctcgacgatctcaaagacttggcttatgatgtggaggacatcttggacaggttttccactgacatgttacgatgcaaggccaaggagcaaaatctggctggtacaagcaagaagcttccttcaagagttgacctggagtttgaccgtcggctcgaggagaaggggggatacctgcagaaaaccctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

203

Amino Acids

23.18

Weight (kDa)

9.28

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AcsI RAATTY 2 cut(s) 71, 299
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 335, 546
AjnI CCWGG 1 cut(s) 555
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 3 cut(s) 25, 331, 538
AluI AGCT 3 cut(s) 25, 331, 538
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 71, 299
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AsuHPI GGTGA 2 cut(s) 67, 67
AsuNHI GCTAGC 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 575
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BauI CACGAG 1 cut(s) 285
BbvI GCAGC 1 cut(s) 235
BceAI ACGGC 2 cut(s) 323, 353
BciT130I CCWGG 1 cut(s) 557
BciVI GTATCC 1 cut(s) 584
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 2 cut(s) 222, 596
BfuAI ACCTGC 1 cut(s) 603
BfuI GTATCC 1 cut(s) 584
BglII AGATCT 1 cut(s) 237
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 575
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 485
BmtI GCTAGC 1 cut(s) 281
BpmI CTGGAG 2 cut(s) 108, 578
BpuEI CTTGAG 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 35, 384, 504
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 3 cut(s) 35, 384, 504
BseLI CCNNNNNNNGG 1 cut(s) 401
BseRI GAGGAG 3 cut(s) 59, 105, 593
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 401
BsnI GGCC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 2 cut(s) 237, 430
BspANI GGCC 1 cut(s) 503
BspMAI CTGCAG 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 603
BspOI GCTAGC 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 35, 384, 504
BssMI GATC 2 cut(s) 237, 430
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 3 cut(s) 35, 384, 504
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 240, 433
BstMBI GATC 2 cut(s) 237, 430
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 3 cut(s) 153, 409, 490
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 2 cut(s) 222, 596
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 1 cut(s) 503
BtsIMutI CAGTG 3 cut(s) 395, 417, 480
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 279
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 525
CviAII CATG 3 cut(s) 150, 406, 487
CviQI GTAC 1 cut(s) 525
DpnI GATC 2 cut(s) 239, 432
DpnII GATC 2 cut(s) 237, 430
Eco130I CCWWGG 3 cut(s) 35, 384, 504
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 3 cut(s) 35, 384, 504
ErhI CCWWGG 3 cut(s) 35, 384, 504
FaeI CATG 3 cut(s) 153, 409, 490
FaiI YATR 6 cut(s) 151, 224, 378, 407, 450, 488
FatI CATG 3 cut(s) 149, 405, 486
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 2 cut(s) 108, 578
HaeIII GGCC 1 cut(s) 503
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 3 cut(s) 153, 409, 490
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 2 cut(s) 329, 536
HinfI GANTC 3 cut(s) 31, 343, 419
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 67, 67
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 1 cut(s) 611
Hpy188III TCNNGA 4 cut(s) 28, 211, 287, 546
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 2 cut(s) 431, 573
HpyAV CCTTC 6 cut(s) 34, 217, 266, 409, 552, 577
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4V TGCA 5 cut(s) 149, 305, 359, 498, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 3 cut(s) 153, 409, 490
Kzo9I GATC 2 cut(s) 237, 430
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 485
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 287, 489
MalI GATC 2 cut(s) 239, 432
MboI GATC 2 cut(s) 237, 430
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 237
MluCI AATT 4 cut(s) 50, 71, 299, 360
MlyI GAGTC 3 cut(s) 25, 352, 428
MnlI CCTC 8 cut(s) 37, 83, 86, 166, 292, 305, 451, 571
MslI CAYNNNNRTG 3 cut(s) 80, 410, 485
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 2 cut(s) 237, 430
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 3 cut(s) 153, 409, 490
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 3 cut(s) 153, 409, 490
OliI CACNNNNGTG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 575
PciI ACATGT 1 cut(s) 486
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 3 cut(s) 25, 351, 427
PpsI GAGTC 3 cut(s) 25, 351, 427
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspXI VCTCGAGB 1 cut(s) 575
PstI CTGCAG 1 cut(s) 600
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 3 cut(s) 80, 410, 485
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 237, 430
SchI GAGTC 3 cut(s) 25, 352, 428
ScrFI CCNGG 1 cut(s) 557
SetI ASST 8 cut(s) 27, 97, 264, 333, 476, 540, 558, 597
SfaNI GCATC 1 cut(s) 485
SfcI CTRYAG 2 cut(s) 222, 596
Sfr274I CTCGAG 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 3 cut(s) 80, 410, 485
SmlI CTYRAG 2 cut(s) 26, 575
SmoI CTYRAG 2 cut(s) 26, 575
Sse9I AATT 4 cut(s) 50, 71, 299, 360
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 3 cut(s) 35, 384, 504
TaaI ACNGT 1 cut(s) 569
TaqI TCGA 5 cut(s) 103, 270, 364, 426, 576
TasI AATT 4 cut(s) 50, 71, 299, 360
TscAI CASTG 3 cut(s) 402, 417, 487
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 17, 160
TspRI CASTG 3 cut(s) 402, 417, 487
XapI RAATTY 2 cut(s) 71, 299
XceI RCATGY 3 cut(s) 153, 409, 490
XhoI CTCGAG 1 cut(s) 575
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.