Rmu_sc0004826.1_g000002

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004826.1
N/A
Physical Location & Seq
Reverse (-)
9192 .. 16508
7317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1572 bp
atggcctatatcccccaatcaacactagcagatacatatgaaggtaaatcaatcaagggtgacttttgccaaacacctattactagtaagaaattcctggcttttcaatatgttcacagaatacctagaactacaggtgagcaggtttatgttcttttggattgtggagtgagtcggggtagctgtggattgagccagagtgagagtcgaagagcgagagagtcagagagagagtcggggtcagctgtggagtcgaagagcgagagtcggggtcagctgtggagtcgaagagcgagagtcggggtcagagagagagtcggggtcagctgtggagtcgaagagcaagaaaagtcagagagagagtcgggggagttttgtggagtgaatgccgtgtcgggtccacctcaatctccgtcggccagagcattccgccgggatctgaagaactgcttatatccgatcctcgatttccatgctaaaattggatctccattcctaatcaacgcctacccttcgcctacaaatcgaacccagcgctggttcgctacgacaacattctcttcgcccaaatcgatgccgtctacgccgcctcaatccaacgactcccacatcggtgagagtaagagtgaaagctacgagcttaaagccttaaactacgccaattaccttcagatacttggcaagtaccaagagaagctgcctctgcctttcatctccggctccgattactccgatgtcgtcgacgccgtcggccccgccatctacaagtttaaagtcggcgatgctgtttgctccgttgctgccctcgggtccttttctcagttcatcatcgtcgatcagtcacttctgtttggagtcccgaaagggtgtggtctggtggctgttggtgcactgccggttgcatttgggacctctcatgtggctcttcttcaccaggccaatttcagctctggtcaagaattgctggtgcttggtgcagctggaggtggtggacttgtgatggtgcagattggaaaggttgttggagctgttgttattgcagtagctaggggagctgagaaggtgcagtatttgaagtcattgatcatgtggtggactccagcagtcaaattttgccgcctcttgttgcctgctgagagggaatcgaattttgggggagagaatgcgggaaatgttggagggaatgtcggtggacatgtttgcacttgcaaagctatggattcataccacggtgggcatgctctaggatggcaagatgtgcagcctcatgatcctcaagttcaagatgcagccaaccatgttgtgaagagccttcaacaaaagttcaattcattgttcccttatgagcttcaagagattgtccatgctaaggcagagggcattcctcctcaaccgatcaacaaggagtgcgggtactttgtgatgcgatacatgcgagatatcattgaggataaagacttgtcgttgtttgctaccaagtgggagaggagaggcagcagccaatatacccaagaaaatattgatcagttgcgaaatgagtgggcgaagtttgtggtgaagacgtatgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

523

Amino Acids

57.29

Weight (kDa)

8.46

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccI GTMKAC 2 cut(s) 581, 741
AciI CCGC 6 cut(s) 430, 587, 756, 1117, 1166, 1410
AclWI GGATC 4 cut(s) 444, 454, 493, 1265
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 3 cut(s) 92, 1109, 1147
AcuI CTGAAG 2 cut(s) 461, 653
AcyI GRCGYC 1 cut(s) 744
AfaI GTAC 2 cut(s) 686, 1415
AfeI AGCGCT 1 cut(s) 536
AfiI CCNNNNNNNGG 2 cut(s) 537, 1369
AflIII ACRYGT 1 cut(s) 1195
AgsI TTSAA 6 cut(s) 107, 1075, 1283, 1316, 1327, 1352
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 96, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 1134, 1166
AleI CACNNNNGTG 1 cut(s) 612
Alw21I GWGCWC 1 cut(s) 892
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 4 cut(s) 444, 454, 493, 1265
Ama87I CYCGRG 1 cut(s) 806
Aor51HI AGCGCT 1 cut(s) 536
AoxI GGCC 4 cut(s) 3, 417, 751, 936
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 7 cut(s) 697, 800, 977, 1261, 1289, 1494, 1497
ApoI RAATTY 3 cut(s) 92, 1109, 1147
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 4 cut(s) 398, 752, 810, 909
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 5 cut(s) 71, 149, 626, 923, 1567
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 3 cut(s) 398, 810, 909
BaeGI GKGCMC 1 cut(s) 892
BbsI GAAGAC 1 cut(s) 1565
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 7 cut(s) 684, 787, 989, 1273, 1301, 1506, 1509
BccI CCATC 3 cut(s) 767, 994, 1242
BceAI ACGGC 3 cut(s) 374, 562, 731
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 2 cut(s) 98, 935
BclI TGATCA 2 cut(s) 1083, 1522
BcnI CCSGG 1 cut(s) 434
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 5 cut(s) 26, 84, 126, 1047, 1244
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 9 cut(s) 587, 698, 801, 978, 1117, 1262, 1290, 1495, 1498
BlsI GCNGC 9 cut(s) 588, 699, 802, 979, 1118, 1263, 1291, 1496, 1499
Bme1390I CCNGG 3 cut(s) 98, 434, 935
Bme18I GGWCC 3 cut(s) 398, 810, 909
BmeT110I CYCGRG 1 cut(s) 806
BmgT120I GGNCC 4 cut(s) 398, 752, 810, 909
BmiI GGNNCC 5 cut(s) 399, 721, 754, 811, 910
BmrFI CCNGG 3 cut(s) 98, 434, 935
BmsI GCATC 4 cut(s) 564, 772, 1276, 1413
BpiI GAAGAC 1 cut(s) 1565
BpmI CTGGAG 2 cut(s) 1002, 1083
Bpu10I CCTNAGC 1 cut(s) 1368
BpuEI CTTGAG 1 cut(s) 1260
BpuMI CCSGG 1 cut(s) 434
Bsa29I ATCGAT 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 2 cut(s) 805, 1228
BsaXI ACNNNNNCTCC 6 cut(s) 1017, 1047, 1170, 1200, 1397, 1427
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 1369
Bse118I RCCGGY 1 cut(s) 895
BseBI CCWGG 2 cut(s) 98, 935
BseCI ATCGAT 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 805, 1228
BseGI GGATG 1 cut(s) 1253
BseLI CCNNNNNNNGG 2 cut(s) 537, 1369
BseMII CTCAG 3 cut(s) 833, 1047, 1125
BseRI GAGGAG 2 cut(s) 1377, 1501
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 7 cut(s) 684, 787, 989, 1273, 1301, 1506, 1509
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 4 cut(s) 996, 1025, 1085, 1280
BshFI GGCC 4 cut(s) 5, 419, 753, 938
BshVI ATCGAT 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 892
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 3 cut(s) 433, 717, 896
BslFI GGGAC 2 cut(s) 842, 922
BslI CCNNNNNNNGG 2 cut(s) 537, 1369
BsmFI GGGAC 2 cut(s) 842, 922
BsmI GAATGC 4 cut(s) 391, 425, 1168, 1380
BsnI GGCC 4 cut(s) 5, 419, 753, 938
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 892
Bsp143I GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
BspACI CCGC 6 cut(s) 430, 587, 756, 1117, 1166, 1410
BspANI GGCC 4 cut(s) 5, 419, 753, 938
BspCNI CTCAG 3 cut(s) 832, 1048, 1126
BspDI ATCGAT 1 cut(s) 572
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 5 cut(s) 399, 721, 754, 811, 910
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 4 cut(s) 444, 454, 493, 1265
BspQI GCTCTTC 6 cut(s) 205, 251, 283, 333, 930, 1301
BsrFI RCCGGY 1 cut(s) 895
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 805, 1228
BssMI GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
BssNI GRCGYC 1 cut(s) 744
Bst2UI CCWGG 2 cut(s) 98, 935
Bst4CI ACNGT 1 cut(s) 1232
Bst6I CTCTTC 7 cut(s) 205, 251, 283, 333, 565, 930, 1301
BstACI GRCGYC 1 cut(s) 744
BstAPI GCANNNNNTGC 1 cut(s) 1258
BstC8I GCNNGC 2 cut(s) 1131, 1239
BstDEI CTNAG 4 cut(s) 819, 1056, 1134, 1368
BstDSI CCRYGG 1 cut(s) 1228
BstF5I GGATG 1 cut(s) 1253
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 8 cut(s) 439, 462, 488, 838, 1086, 1273, 1398, 1525
BstMBI GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
BstMWI GCNNNNNNNGC 6 cut(s) 583, 703, 887, 1052, 1258, 1432
BstNI CCWGG 2 cut(s) 98, 935
BstNSI RCATGY 3 cut(s) 1199, 1241, 1435
BstSCI CCNGG 3 cut(s) 96, 432, 933
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 892
BstV1I GCAGC 7 cut(s) 684, 787, 989, 1273, 1301, 1506, 1509
BstV2I GAAGAC 1 cut(s) 1565
BstX2I RGATCY 2 cut(s) 436, 485
BstYI RGATCY 2 cut(s) 436, 485
Bsu15I ATCGAT 1 cut(s) 572
BsuRI GGCC 4 cut(s) 5, 419, 753, 938
BsuTUI ATCGAT 1 cut(s) 572
BtgI CCRYGG 1 cut(s) 1228
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 1 cut(s) 1253
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 1 cut(s) 890
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 1131, 1239
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 4 cut(s) 398, 752, 810, 909
ClaI ATCGAT 1 cut(s) 572
CseI GACGC 1 cut(s) 752
Csp6I GTAC 2 cut(s) 685, 1414
CviAII CATG 9 cut(s) 473, 917, 1087, 1196, 1238, 1268, 1298, 1364, 1432
CviQI GTAC 2 cut(s) 685, 1414
DdeI CTNAG 4 cut(s) 819, 1056, 1134, 1368
DpnI GATC 8 cut(s) 438, 461, 487, 837, 1085, 1272, 1397, 1524
DpnII GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
DraI TTTAAA 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 7 cut(s) 205, 251, 283, 333, 565, 930, 1301
EarI CTCTTC 7 cut(s) 205, 251, 283, 333, 565, 930, 1301
EciI GGCGGA 1 cut(s) 419
Eco32I GATATC 1 cut(s) 1441
Eco47I GGWCC 3 cut(s) 398, 810, 909
Eco47III AGCGCT 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 461, 653
Eco88I CYCGRG 1 cut(s) 806
EcoO109I RGGNCCY 2 cut(s) 810, 909
EcoRII CCWGG 2 cut(s) 96, 933
EcoRV GATATC 1 cut(s) 1441
FaeI CATG 9 cut(s) 476, 920, 1090, 1199, 1241, 1271, 1301, 1367, 1435
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 434, 466
FaqI GGGAC 2 cut(s) 842, 922
FatI CATG 9 cut(s) 472, 916, 1086, 1195, 1237, 1267, 1297, 1363, 1431
FauI CCCGC 3 cut(s) 763, 1159, 1403
FauNDI CATATG 1 cut(s) 37
FbaI TGATCA 2 cut(s) 1083, 1522
FblI GTMKAC 2 cut(s) 581, 741
Fnu4HI GCNGC 9 cut(s) 587, 698, 801, 978, 1117, 1262, 1290, 1495, 1498
FokI GGATG 1 cut(s) 1260
Fsp4HI GCNGC 9 cut(s) 587, 698, 801, 978, 1117, 1262, 1290, 1495, 1498
FspBI CTAG 5 cut(s) 26, 84, 126, 1047, 1244
GlaI GCGC 1 cut(s) 536
GluI GCNGC 9 cut(s) 587, 698, 801, 978, 1117, 1262, 1290, 1495, 1498
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 2 cut(s) 1002, 1083
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 4 cut(s) 5, 419, 753, 938
HapII CCGG 3 cut(s) 433, 717, 896
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 9 cut(s) 476, 920, 1090, 1199, 1241, 1271, 1301, 1367, 1435
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HpaII CCGG 3 cut(s) 433, 717, 896
HphI GGTGA 5 cut(s) 71, 149, 626, 923, 1567
Hpy166II GTNNAC 8 cut(s) 115, 401, 582, 742, 890, 992, 1095, 1193
Hpy188I TCNGA 8 cut(s) 226, 308, 355, 441, 459, 672, 724, 733
Hpy188III TCNNGA 5 cut(s) 859, 956, 1268, 1283, 1352
Hpy8I GTNNAC 8 cut(s) 115, 401, 582, 742, 890, 992, 1095, 1193
Hpy99I CGWCG 5 cut(s) 418, 743, 746, 752, 836
HpyAV CCTTC 5 cut(s) 35, 522, 677, 1054, 1322
HpyCH4III ACNGT 1 cut(s) 1232
HpyCH4IV ACGT 1 cut(s) 1562
HpyF10VI GCNNNNNNNGC 6 cut(s) 583, 703, 887, 1052, 1258, 1432
HpyF3I CTNAG 4 cut(s) 819, 1056, 1134, 1368
HpySE526I ACGT 1 cut(s) 1562
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 9 cut(s) 476, 920, 1090, 1199, 1241, 1271, 1301, 1367, 1435
HspAI GCGC 1 cut(s) 535
Ksp22I TGATCA 2 cut(s) 1083, 1522
Kzo9I GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
LguI GCTCTTC 6 cut(s) 205, 251, 283, 333, 930, 1301
LmnI GCTCC 4 cut(s) 725, 797, 1025, 1052
Lsp1109I GCAGC 7 cut(s) 684, 787, 989, 1273, 1301, 1506, 1509
LweI GCATC 4 cut(s) 564, 772, 1276, 1413
MaeI CTAG 5 cut(s) 26, 84, 126, 1047, 1244
MaeII ACGT 1 cut(s) 1562
MaeIII GTNAC 2 cut(s) 59, 840
MalI GATC 8 cut(s) 438, 461, 487, 837, 1085, 1272, 1397, 1524
MboI GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
MflI RGATCY 2 cut(s) 436, 485
MhlI GDGCHC 1 cut(s) 892
MluCI AATT 8 cut(s) 92, 480, 661, 940, 959, 1109, 1147, 1327
MmeI TCCRAC 3 cut(s) 621, 1003, 1156
MseI TTAA 3 cut(s) 642, 650, 771
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 4 cut(s) 245, 277, 327, 980
MspI CCGG 3 cut(s) 433, 717, 896
MspR9I CCNGG 3 cut(s) 98, 434, 935
Mva1269I GAATGC 4 cut(s) 391, 425, 1168, 1380
MvaI CCWGG 2 cut(s) 98, 935
MwoI GCNNNNNNNGC 6 cut(s) 583, 703, 887, 1052, 1258, 1432
NciI CCSGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 37
NdeII GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
NlaIII CATG 9 cut(s) 476, 920, 1090, 1199, 1241, 1271, 1301, 1367, 1435
NlaIV GGNNCC 5 cut(s) 399, 721, 754, 811, 910
NmuCI GTSAC 2 cut(s) 59, 840
NspI RCATGY 3 cut(s) 1199, 1241, 1435
OliI CACNNNNGTG 1 cut(s) 612
PaeI GCATGC 1 cut(s) 1241
PagI TCATGA 1 cut(s) 1267
PciI ACATGT 1 cut(s) 1195
PciSI GCTCTTC 6 cut(s) 205, 251, 283, 333, 930, 1301
PcsI WCGNNNNNNNCGW 2 cut(s) 569, 744
PctI GAATGC 4 cut(s) 391, 425, 1168, 1380
PfeI GAWTC 2 cut(s) 1142, 1220
PflFI GACNNNGTC 1 cut(s) 746
PkrI GCNGC 9 cut(s) 588, 699, 802, 979, 1118, 1263, 1291, 1496, 1499
PpuMI RGGWCCY 2 cut(s) 810, 909
PscI ACATGT 1 cut(s) 1195
Psp5II RGGWCCY 2 cut(s) 810, 909
Psp6I CCWGG 2 cut(s) 96, 933
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 2 cut(s) 96, 933
PspN4I GGNNCC 5 cut(s) 399, 721, 754, 811, 910
PspPI GGNCC 4 cut(s) 398, 752, 810, 909
PspPPI RGGWCCY 2 cut(s) 810, 909
PsuI RGATCY 2 cut(s) 436, 485
PsyI GACNNNGTC 1 cut(s) 746
PvuII CAGCTG 4 cut(s) 245, 277, 327, 980
RsaI GTAC 2 cut(s) 686, 1415
RsaNI GTAC 2 cut(s) 685, 1414
RseI CAYNNNNRTG 1 cut(s) 612
SalI GTCGAC 1 cut(s) 740
SapI GCTCTTC 6 cut(s) 205, 251, 283, 333, 930, 1301
SaqAI TTAA 3 cut(s) 642, 650, 771
SatI GCNGC 9 cut(s) 587, 698, 801, 978, 1117, 1262, 1290, 1495, 1498
Sau3AI GATC 8 cut(s) 436, 459, 485, 835, 1083, 1270, 1395, 1522
Sau96I GGNCC 4 cut(s) 398, 752, 810, 909
ScrFI CCNGG 3 cut(s) 98, 434, 935
SduI GDGCHC 1 cut(s) 892
SfaNI GCATC 4 cut(s) 564, 772, 1276, 1413
SfcI CTRYAG 1 cut(s) 132
SgrDI CGTCGACG 1 cut(s) 740
SinI GGWCC 3 cut(s) 398, 810, 909
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 1275
SmoI CTYRAG 1 cut(s) 1275
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 8 cut(s) 92, 480, 661, 940, 959, 1109, 1147, 1327
SsiI CCGC 6 cut(s) 430, 587, 756, 1117, 1166, 1410
SspI AATATT 1 cut(s) 1519
SspMI CTAG 5 cut(s) 26, 84, 126, 1047, 1244
StyD4I CCNGG 3 cut(s) 96, 432, 933
TaaI ACNGT 1 cut(s) 1232
TaiI ACGT 1 cut(s) 1565
TasI AATT 8 cut(s) 92, 480, 661, 940, 959, 1109, 1147, 1327
TauI GCSGC 2 cut(s) 589, 1119
TfiI GAWTC 2 cut(s) 1142, 1220
Tru1I TTAA 3 cut(s) 642, 650, 771
Tru9I TTAA 3 cut(s) 642, 650, 771
TscAI CASTG 1 cut(s) 897
TseFI GTSAC 2 cut(s) 59, 840
TseI GCWGC 7 cut(s) 697, 800, 977, 1261, 1289, 1494, 1497
Tsp45I GTSAC 2 cut(s) 59, 840
TspDTI ATGAA 5 cut(s) 54, 700, 814, 1212, 1320
TspGWI ACGGA 2 cut(s) 402, 784
TspRI CASTG 1 cut(s) 897
Tth111I GACNNNGTC 1 cut(s) 746
VneI GTGCAC 1 cut(s) 888
VpaK11BI GGWCC 3 cut(s) 398, 810, 909
XapI RAATTY 3 cut(s) 92, 1109, 1147
XceI RCATGY 3 cut(s) 1199, 1241, 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XmiI GTMKAC 2 cut(s) 581, 741
XspI CTAG 5 cut(s) 26, 84, 126, 1047, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.