Rmu_sc0004835.1_g000019

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004835.1
N/A
Physical Location & Seq
Forward (+)
71506 .. 75221
3716 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
atggatgcaagcgatggcgaaaatctcagttgtgatccccgaggtttccctgtggaggagttcggaagagatcttgaagaagaggaaccggttgttccaagtcgggttctcgcctccatgtcccattgttggaggtggccgaagctgagatttccgaccggggcctacctgagcgagatgttgagatggtttctgggttgttgtgctttctacattccaaatgagcgtcgccaccgcttgagggataagaggaagccggtgcgcgtcgaacaccactggtgcagtgctgaactgaggccagatggtgaagaatcagtcgggtctccagttcgagtcgagtttggccatgggttgaactggagagaaaatgaacaggcaaagcagcctaagtgtcaaggattagctttgctttggaatttagatctcaaggttgatgttagaaccttctcgttccaccatattgacgtagatgtctcagaccagaatgaatcagcctcttggtgcttcagtggtatatatggctttgctgctagaagagatcgaaatcttacgtggtctcttattgaaaccctagcgcgggaaaattatcccctcccttggctaatggttggtgactttaatgaagtttggttcacatggtcaaataagtttatgaaggaaaggctagattggggattccaatcaacacagtggagagatcggtaccctttcagtcatgtgattactttgcctccttcggactctgaccataatccccttcttgtggaagtcaaagcacaacgtagcccaccaagttgttgccctagaagatttcgttttgaagaaagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

276

Amino Acids

32.52

Weight (kDa)

6.02

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 702
AccII CGCG 2 cut(s) 264, 577
AciI CCGC 2 cut(s) 235, 577
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 137, 343
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 490
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 7 cut(s) 55, 129, 241, 576, 577, 597, 763
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 4 cut(s) 77, 355, 566, 821
AluBI AGCT 2 cut(s) 145, 404
AluI AGCT 2 cut(s) 145, 404
Alw26I GTCTC 3 cut(s) 327, 478, 561
AlwI GGATC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 4 cut(s) 137, 162, 296, 343
ApeKI GCWGC 2 cut(s) 382, 527
ApoI RAATTY 1 cut(s) 415
AsiGI ACCGGT 1 cut(s) 88
Asp718I GGTACC 1 cut(s) 702
AspLEI GCGC 2 cut(s) 264, 577
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 317, 623
AvaI CYCGRG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 394, 514
BccI CCATC 3 cut(s) 8, 180, 296
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 327, 478, 561
BfaI CTAG 4 cut(s) 531, 572, 665, 804
BglII AGATCT 2 cut(s) 70, 421
BisI GCNGC 2 cut(s) 383, 528
BlsI GCNGC 2 cut(s) 384, 529
Bme1390I CCNGG 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 87, 163, 704
BmrFI CCNGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 309, 379
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 259, 410
BpuMI CCSGG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 552
BsaBI GATNNNNATC 2 cut(s) 543, 679
BsaI GGTCTC 2 cut(s) 327, 561
BsaJI CCNNGG 4 cut(s) 40, 159, 346, 596
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 129, 241, 576, 577, 597, 763
Bse118I RCCGGY 2 cut(s) 88, 256
Bse1I ACTGG 3 cut(s) 281, 326, 362
Bse8I GATNNNNATC 2 cut(s) 543, 679
BseDI CCNNGG 4 cut(s) 40, 159, 346, 596
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 543, 679
BseLI CCNNNNNNNGG 7 cut(s) 55, 129, 241, 576, 577, 597, 763
BseMII CTCAG 5 cut(s) 40, 137, 161, 284, 489
BseNI ACTGG 3 cut(s) 281, 326, 362
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 394, 514
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 2 cut(s) 264, 577
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 4 cut(s) 139, 164, 298, 345
BshNI GGYRCC 1 cut(s) 702
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 3 cut(s) 89, 159, 257
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 7 cut(s) 55, 129, 241, 576, 577, 597, 763
BsmAI GTCTC 3 cut(s) 327, 478, 561
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 4 cut(s) 139, 164, 298, 345
Bso31I GGTCTC 2 cut(s) 327, 561
BsoBI CYCGRG 1 cut(s) 39
Bsp143I GATC 5 cut(s) 34, 70, 421, 538, 697
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 2 cut(s) 235, 577
BspANI GGCC 4 cut(s) 139, 164, 298, 345
BspCNI CTCAG 5 cut(s) 39, 138, 162, 285, 488
BspFNI CGCG 2 cut(s) 264, 577
BspLI GGNNCC 3 cut(s) 87, 163, 704
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 702
BspTNI GGTCTC 2 cut(s) 327, 561
BsrFI RCCGGY 2 cut(s) 88, 256
BsrI ACTGG 3 cut(s) 281, 326, 362
BssAI RCCGGY 2 cut(s) 88, 256
BssECI CCNNGG 4 cut(s) 40, 159, 346, 596
BssMI GATC 5 cut(s) 34, 70, 421, 538, 697
BssT1I CCWWGG 2 cut(s) 346, 596
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 3 cut(s) 61, 75, 529
BstBAI YACGTR 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 6 cut(s) 26, 146, 170, 293, 387, 475
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 264, 577
BstHHI GCGC 2 cut(s) 264, 577
BstKTI GATC 5 cut(s) 37, 73, 424, 541, 700
BstMAI GTCTC 3 cut(s) 327, 478, 561
BstMBI GATC 5 cut(s) 34, 70, 421, 538, 697
BstMCI CGRYCG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 2 cut(s) 264, 577
BstV1I GCAGC 2 cut(s) 394, 514
BstX2I RGATCY 2 cut(s) 70, 421
BstYI RGATCY 2 cut(s) 70, 421
BsuRI GGCC 4 cut(s) 139, 164, 298, 345
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 4 cut(s) 274, 289, 514, 695
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 2 cut(s) 264, 577
Cfr10I RCCGGY 2 cut(s) 88, 256
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 2 cut(s) 215, 253
Csp6I GTAC 1 cut(s) 703
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 4 cut(s) 118, 347, 636, 716
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 6 cut(s) 26, 146, 170, 293, 387, 475
DpnI GATC 5 cut(s) 36, 72, 423, 540, 699
DpnII GATC 5 cut(s) 34, 70, 421, 538, 697
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
EaeI YGGCCR 2 cut(s) 137, 343
Eam1104I CTCTTC 3 cut(s) 61, 75, 529
EarI CTCTTC 3 cut(s) 61, 75, 529
Eco130I CCWWGG 2 cut(s) 346, 596
Eco31I GGTCTC 2 cut(s) 327, 561
Eco57I CTGAAG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 346, 596
ErhI CCWWGG 2 cut(s) 346, 596
FaeI CATG 4 cut(s) 121, 350, 639, 719
FaqI GGGAC 1 cut(s) 106
FatI CATG 4 cut(s) 117, 346, 635, 715
FauI CCCGC 1 cut(s) 570
Fnu4HI GCNGC 2 cut(s) 383, 528
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 383, 528
FspBI CTAG 4 cut(s) 531, 572, 665, 804
GlaI GCGC 2 cut(s) 263, 576
GluI GCNGC 2 cut(s) 383, 528
GsuI CTGGAG 2 cut(s) 309, 379
HaeIII GGCC 4 cut(s) 139, 164, 298, 345
HapII CCGG 3 cut(s) 89, 159, 257
HgaI GACGC 2 cut(s) 215, 253
HhaI GCGC 2 cut(s) 264, 577
Hin1II CATG 4 cut(s) 121, 350, 639, 719
Hin6I GCGC 2 cut(s) 262, 575
HinP1I GCGC 2 cut(s) 262, 575
HinfI GANTC 5 cut(s) 311, 333, 488, 675, 740
HpaII CCGG 3 cut(s) 89, 159, 257
HphI GGTGA 2 cut(s) 317, 623
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 5 cut(s) 65, 156, 478, 739, 745
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 2 cut(s) 231, 269
HpyAV CCTTC 4 cut(s) 454, 649, 744, 767
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4IV ACGT 3 cut(s) 465, 551, 781
HpyCH4V TGCA 2 cut(s) 8, 282
HpyF3I CTNAG 6 cut(s) 26, 146, 170, 293, 387, 475
HpySE526I ACGT 3 cut(s) 465, 551, 781
Hsp92II CATG 4 cut(s) 121, 350, 639, 719
HspAI GCGC 2 cut(s) 262, 575
KpnI GGTACC 1 cut(s) 706
Kzo9I GATC 5 cut(s) 34, 70, 421, 538, 697
Lsp1109I GCAGC 2 cut(s) 394, 514
MaeI CTAG 4 cut(s) 531, 572, 665, 804
MaeII ACGT 3 cut(s) 465, 551, 781
MaeIII GTNAC 1 cut(s) 611
MalI GATC 5 cut(s) 36, 72, 423, 540, 699
MboI GATC 5 cut(s) 34, 70, 421, 538, 697
MboII GAAGA 6 cut(s) 78, 89, 92, 320, 546, 819
MflI RGATCY 2 cut(s) 70, 421
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 415, 583
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 2 cut(s) 342, 734
MmeI TCCRAC 2 cut(s) 110, 179
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
MseI TTAA 1 cut(s) 618
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 3 cut(s) 89, 159, 257
MspR9I CCNGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 264, 577
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 1 cut(s) 346
NdeII GATC 5 cut(s) 34, 70, 421, 538, 697
NlaIII CATG 4 cut(s) 121, 350, 639, 719
NlaIV GGNNCC 3 cut(s) 87, 163, 704
NmuCI GTSAC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 311, 488, 675
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 384, 529
PleI GAGTC 2 cut(s) 341, 734
PpsI GAGTC 2 cut(s) 341, 734
Ppu21I YACGTR 1 cut(s) 552
PspN4I GGNNCC 3 cut(s) 87, 163, 704
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 2 cut(s) 70, 421
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 2 cut(s) 383, 528
Sau3AI GATC 5 cut(s) 34, 70, 421, 538, 697
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 2 cut(s) 342, 734
ScrFI CCNGG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 238, 425
SmoI CTYRAG 2 cut(s) 238, 425
Sse9I AATT 2 cut(s) 415, 583
SsiI CCGC 2 cut(s) 235, 577
SspMI CTAG 4 cut(s) 531, 572, 665, 804
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 346, 596
TaaI ACNGT 1 cut(s) 690
TaiI ACGT 3 cut(s) 468, 554, 784
TaqI TCGA 4 cut(s) 267, 331, 336, 541
TasI AATT 2 cut(s) 415, 583
TfiI GAWTC 3 cut(s) 311, 488, 675
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 4 cut(s) 281, 289, 514, 695
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 382, 527
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 4 cut(s) 384, 501, 636, 668
TspRI CASTG 4 cut(s) 281, 289, 514, 695
XapI RAATTY 1 cut(s) 415
XspI CTAG 4 cut(s) 531, 572, 665, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.