Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004836.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

92254 .. 98609

Gene Structure 6356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004836.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgaccgaggaggatgaggaggaagaggatgacgacgatgatgatgaatacgacccctatcatggcgacggcggtgggagtcctgggataccaaatgtgcggtggtttggagttgaaggagattataacgttttggtaatggatttgctgggtcctagtcttgaagacttatttaacttctgtagtaggaaactttctttggagacacttatgctggcagaagacagttatgctggcagatcaaatggaacctcactgcctgaaccgctagacattgaaccgttacaaaccataccatgggaagtagcgatggctcgtgctgcgtgccccaaaactgcgacggcaagagctgataccgccccccgccagcagcgtgaggagaggctagttagcaacagtgctgcaagtggttccgctagcggggaagatgcagtgggggaagaagtggaatcggcctgggtcctccatgacggctacacagctgttcatgaggctgtgttccatcagggcgtgacgtttccactgctgccgaatcttcagatcctgatttgcaagtttgacctcccgttcgggcagatttgccctagcatatggggattgttgatggcgctgaactcgttgtttggttgcgaaggtccgaccgtggccgaggtgcttcatttctacgaacttgtctatgtgaggcgccaaggattcgatgtccccctggcggtcgaccttttcgttgcgacggagagatgggagtacgacgccagggtgaacaagcaagcgccgacctttagaattaagtcggagttccaacctatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

269

Amino Acids

29.85

Weight (kDa)

4.24

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	684
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	8 cut(s)	72, 100, 266, 357, 364, 414, 420, 710
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	2 cut(s)	685, 750
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	4 cut(s)	62, 297, 420, 709
AgsI	TTSAA	3 cut(s)	116, 164, 278
AjnI	CCWGG	4 cut(s)	82, 455, 705, 752
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	350, 482
AluI	AGCT	2 cut(s)	350, 482
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	535
AlwNI	CAGNNNCTG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	453, 645
ApeKI	GCWGC	4 cut(s)	320, 370, 401, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	3 cut(s)	610, 687, 772
AspS9I	GGNCC	3 cut(s)	152, 460, 635
AsuHPI	GGTGA	1 cut(s)	769
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	152, 460, 635
BaeGI	GKGCMC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	171, 228
BbvI	GCAGC	4 cut(s)	307, 382, 388, 513
BccI	CCATC	4 cut(s)	304, 510, 598, 732
BceAI	ACGGC	3 cut(s)	85, 357, 487
BciT130I	CCWGG	4 cut(s)	84, 457, 707, 754
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	5 cut(s)	156, 269, 386, 417, 585
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	3 cut(s)	611, 688, 773
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	4 cut(s)	321, 371, 402, 527
BlsI	GCNGC	4 cut(s)	322, 372, 403, 528
Bme1390I	CCNGG	4 cut(s)	84, 457, 707, 754
Bme18I	GGWCC	3 cut(s)	152, 460, 635
BmgT120I	GGNCC	3 cut(s)	152, 460, 635
BmiI	GGNNCC	5 cut(s)	153, 250, 412, 461, 686
BmrFI	CCNGG	4 cut(s)	84, 457, 707, 754
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	171, 228
BsaHI	GRCGYC	2 cut(s)	685, 750
BsaJI	CCNNGG	9 cut(s)	6, 83, 296, 456, 642, 648, 688, 705, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 297, 420, 709
BseBI	CCWGG	4 cut(s)	84, 457, 707, 754
BseDI	CCNNGG	9 cut(s)	6, 83, 296, 456, 642, 648, 688, 705, 753
BseGI	GGATG	2 cut(s)	19, 34
BseLI	CCNNNNNNNGG	4 cut(s)	62, 297, 420, 709
BseRI	GAGGAG	3 cut(s)	23, 32, 392
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	307, 382, 388, 513
BseYI	CCCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	2 cut(s)	642, 714
BshFI	GGCC	2 cut(s)	455, 647
BshNI	GGYRCC	1 cut(s)	684
BsiEI	CGRYCG	2 cut(s)	642, 714
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	4 cut(s)	62, 297, 420, 709
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	455, 647
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	239, 540
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	8 cut(s)	72, 100, 266, 357, 364, 414, 420, 710
BspANI	GGCC	2 cut(s)	455, 647
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	5 cut(s)	153, 250, 412, 461, 686
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	684
BssECI	CCNNGG	9 cut(s)	6, 83, 296, 456, 642, 648, 688, 705, 753
BssMI	GATC	2 cut(s)	239, 540
BssNI	GRCGYC	2 cut(s)	685, 750
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	296, 688
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	4 cut(s)	84, 457, 707, 754
Bst4CI	ACNGT	4 cut(s)	227, 282, 398, 643
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	685, 750
BstC8I	GCNNGC	6 cut(s)	216, 235, 325, 368, 418, 768
BstDSI	CCRYGG	2 cut(s)	296, 642
BstF5I	GGATG	2 cut(s)	19, 34
BstH2I	RGCGCY	3 cut(s)	611, 688, 773
BstHHI	GCGC	3 cut(s)	610, 687, 772
BstKTI	GATC	2 cut(s)	242, 543
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	239, 540
BstMCI	CGRYCG	2 cut(s)	642, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 320, 356
BstNI	CCWGG	4 cut(s)	84, 457, 707, 754
BstSCI	CCNGG	4 cut(s)	82, 455, 705, 752
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	4 cut(s)	307, 382, 388, 513
BstV2I	GAAGAC	2 cut(s)	171, 228
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	455, 647
BtgI	CCRYGG	2 cut(s)	296, 642
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	19, 34
BtsI	GCAGTG	3 cut(s)	254, 438, 521
BtsIMutI	CAGTG	4 cut(s)	254, 403, 438, 521
Cac8I	GCNNGC	6 cut(s)	216, 235, 325, 368, 418, 768
CaiI	CAGNNNCTG	1 cut(s)	544
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	3 cut(s)	610, 687, 772
Cfr13I	GGNCC	3 cut(s)	152, 460, 635
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	4 cut(s)	62, 297, 467, 488
CviJI	RGCY	8 cut(s)	314, 350, 385, 455, 474, 482, 494, 647
CviKI_1	RGCY	8 cut(s)	314, 350, 385, 455, 474, 482, 494, 647
CviQI	GTAC	1 cut(s)	745
DinI	GGCGCC	1 cut(s)	686
DpnI	GATC	2 cut(s)	241, 542
DpnII	GATC	2 cut(s)	239, 540
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	296, 688
Eco47I	GGWCC	3 cut(s)	152, 460, 635
Eco57I	CTGAAG	1 cut(s)	521
EcoO109I	RGGNCCY	2 cut(s)	152, 460
EcoRII	CCWGG	4 cut(s)	82, 455, 705, 752
EcoT14I	CCWWGG	2 cut(s)	296, 688
EgeI	GGCGCC	1 cut(s)	686
EheI	GGCGCC	1 cut(s)	686
ErhI	CCWWGG	2 cut(s)	296, 688
FaeI	CATG	4 cut(s)	65, 300, 470, 491
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	4 cut(s)	61, 296, 466, 487
FauI	CCCGC	2 cut(s)	371, 413
FauNDI	CATATG	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	4 cut(s)	321, 371, 402, 527
FokI	GGATG	2 cut(s)	26, 41
Fsp4HI	GCNGC	4 cut(s)	321, 371, 402, 527
FspBI	CTAG	5 cut(s)	156, 269, 386, 417, 585
GlaI	GCGC	3 cut(s)	609, 686, 771
GluI	GCNGC	4 cut(s)	321, 371, 402, 527
GsaI	CCCAGC	1 cut(s)	152
HaeII	RGCGCY	3 cut(s)	611, 688, 773
HaeIII	GGCC	2 cut(s)	455, 647
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	3 cut(s)	610, 687, 772
Hin1I	GRCGYC	2 cut(s)	685, 750
Hin1II	CATG	4 cut(s)	65, 300, 470, 491
Hin6I	GCGC	3 cut(s)	608, 685, 770
HinP1I	GCGC	3 cut(s)	608, 685, 770
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	4 cut(s)	79, 449, 532, 693
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	2 cut(s)	715, 760
Hpy188I	TCNGA	3 cut(s)	540, 639, 793
Hpy188III	TCNNGA	3 cut(s)	161, 488, 544
Hpy8I	GTNNAC	2 cut(s)	715, 760
Hpy99I	CGWCG	5 cut(s)	38, 71, 343, 733, 752
HpyAV	CCTTC	2 cut(s)	110, 626
HpyCH4III	ACNGT	4 cut(s)	227, 282, 398, 643
HpyCH4IV	ACGT	2 cut(s)	129, 515
HpyCH4V	TGCA	3 cut(s)	404, 431, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 320, 356
HpySE526I	ACGT	2 cut(s)	129, 515
Hsp92I	GRCGYC	2 cut(s)	685, 750
Hsp92II	CATG	4 cut(s)	65, 300, 470, 491
HspAI	GCGC	3 cut(s)	608, 685, 770
KasI	GGCGCC	1 cut(s)	684
Kzo9I	GATC	2 cut(s)	239, 540
Lsp1109I	GCAGC	4 cut(s)	307, 382, 388, 513
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	5 cut(s)	156, 269, 386, 417, 585
MaeII	ACGT	2 cut(s)	129, 515
MaeIII	GTNAC	2 cut(s)	282, 511
MalI	GATC	2 cut(s)	241, 542
MboI	GATC	2 cut(s)	239, 540
MboII	GAAGA	6 cut(s)	35, 176, 233, 437, 452, 527
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	783
Mly113I	GGCGCC	1 cut(s)	685
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	662, 771
MseI	TTAA	2 cut(s)	174, 786
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	4 cut(s)	84, 457, 707, 754
MvaI	CCWGG	4 cut(s)	84, 457, 707, 754
MwoI	GCNNNNNNNGC	3 cut(s)	265, 320, 356
NarI	GGCGCC	1 cut(s)	685
NcoI	CCATGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	2 cut(s)	239, 540
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	65, 300, 470, 491
NlaIV	GGNNCC	5 cut(s)	153, 250, 412, 461, 686
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	449, 532, 693
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	322, 372, 403, 528
PleI	GAGTC	1 cut(s)	87
PluTI	GGCGCC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	87
PpuMI	RGGWCCY	2 cut(s)	152, 460
PsiI	TTATAA	1 cut(s)	126
Psp1406I	AACGTT	1 cut(s)	129
Psp5II	RGGWCCY	2 cut(s)	152, 460
Psp6I	CCWGG	4 cut(s)	82, 455, 705, 752
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	4 cut(s)	82, 455, 705, 752
PspN4I	GGNNCC	5 cut(s)	153, 250, 412, 461, 686
PspPI	GGNCC	3 cut(s)	152, 460, 635
PspPPI	RGGWCCY	2 cut(s)	152, 460
PstNI	CAGNNNCTG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
SalI	GTCGAC	1 cut(s)	713
SaqAI	TTAA	2 cut(s)	174, 786
SatI	GCNGC	4 cut(s)	321, 371, 402, 527
Sau3AI	GATC	2 cut(s)	239, 540
Sau96I	GGNCC	3 cut(s)	152, 460, 635
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	4 cut(s)	84, 457, 707, 754
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	686
SinI	GGWCC	3 cut(s)	152, 460, 635
Sse9I	AATT	1 cut(s)	783
SsiI	CCGC	8 cut(s)	72, 100, 266, 357, 364, 414, 420, 710
SspDI	GGCGCC	1 cut(s)	684
SspMI	CTAG	5 cut(s)	156, 269, 386, 417, 585
StyD4I	CCNGG	4 cut(s)	82, 455, 705, 752
StyI	CCWWGG	2 cut(s)	296, 688
TaaI	ACNGT	4 cut(s)	227, 282, 398, 643
TaiI	ACGT	2 cut(s)	132, 518
TaqI	TCGA	2 cut(s)	696, 714
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	783
TfiI	GAWTC	3 cut(s)	449, 532, 693
Tru1I	TTAA	2 cut(s)	174, 786
Tru9I	TTAA	2 cut(s)	174, 786
TscAI	CASTG	4 cut(s)	261, 403, 438, 528
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	4 cut(s)	320, 370, 401, 526
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	60, 476, 647
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	4 cut(s)	261, 403, 438, 528
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	3 cut(s)	152, 460, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	5 cut(s)	156, 269, 386, 417, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.