Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004839.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2009

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

acttgaagtttgatgcaagaagagacttagatgatgtaggcgcaacttgtatagaagttcatgctttgaacaagctgccatattctaagcttgattccaagtctgttggcatcaaggagggagttatattcctcacatacagcagccttatagcatcttctgagaaaggtcgttcacgcatgcagcagcttgtgcagtggtgtggatcaggatatgatggtcttatcgtctttgacgagtgtcacaaagccaaaaatttgatacctgaagctggaagtcagccaacacgaaccggtgaagcagttcttgacattcaggctcgactgcctgaagctcgggtcatttattgctcggcaactggtgcatcagaaccacgcaacttgggttacatggttcggcttggtctttggggccctggaacatctttttctgagttccgtgaatttctaggtggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

151

Amino Acids

16.53

Weight (kDa)

6.92

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_34	PF13872	1 - 149	1.6e-61	P-loop containing NTP hydrolase pore-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	255, 442
AcuI	CTGAAG	2 cut(s)	287, 350
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	6, 69
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	5 cut(s)	75, 90, 189, 271, 334
AluI	AGCT	5 cut(s)	75, 90, 189, 271, 334
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	411
ApaI	GGGCCC	1 cut(s)	415
ApeKI	GCWGC	4 cut(s)	75, 143, 183, 186
ApoI	RAATTY	2 cut(s)	255, 442
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	411, 412
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	4 cut(s)	62, 155, 195, 198
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	448
BisI	GCNGC	4 cut(s)	76, 144, 184, 187
BlsI	GCNGC	4 cut(s)	77, 145, 185, 188
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	411, 412
BmiI	GGNNCC	2 cut(s)	412, 413
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	4 cut(s)	3, 119, 163, 373
BoxI	GACNNNNGTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	152, 422
BseNI	ACTGG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	4 cut(s)	62, 155, 195, 198
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	335
Bsp120I	GGGCCC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	153, 423
BspLI	GGNNCC	2 cut(s)	412, 413
BspPI	GGATC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	2 cut(s)	192, 361
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	27, 86, 161, 431
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 361
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	183
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	4 cut(s)	62, 155, 195, 198
BsuRI	GGCC	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	411, 412
CspAI	ACCGGT	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	3 cut(s)	61, 180, 390
DdeI	CTNAG	4 cut(s)	27, 86, 161, 431
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	287, 350
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	2 cut(s)	411, 412
EcoRII	CCWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	415
FaeI	CATG	3 cut(s)	64, 183, 393
FaiI	YATR	9 cut(s)	52, 62, 81, 127, 138, 151, 181, 215, 391
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	3 cut(s)	60, 179, 389
Fnu4HI	GCNGC	4 cut(s)	76, 144, 184, 187
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	4 cut(s)	76, 144, 184, 187
FspBI	CTAG	1 cut(s)	448
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	76, 144, 184, 187
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	64, 183, 393
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	162, 369, 432
Hpy188III	TCNNGA	2 cut(s)	209, 307
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	16, 183, 195, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 361
HpyF3I	CTNAG	4 cut(s)	27, 86, 161, 431
Hsp92II	CATG	3 cut(s)	64, 183, 393
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	194, 257, 278, 301, 306, 341, 344, 401, 428
Lsp1109I	GCAGC	4 cut(s)	62, 155, 195, 198
LweI	GCATC	4 cut(s)	3, 119, 163, 373
MaeI	CTAG	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	241, 385
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	32, 149
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	2 cut(s)	255, 442
MnlI	CCTC	2 cut(s)	111, 142
MroXI	GAANNNNTTC	1 cut(s)	302
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	192, 361
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	64, 183, 393
NlaIV	GGNNCC	2 cut(s)	412, 413
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	94
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	77, 145, 185, 188
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	412, 413
PspOMI	GGGCCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	411, 412
SatI	GCNGC	4 cut(s)	76, 144, 184, 187
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	411, 412
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	8 cut(s)	77, 92, 171, 191, 267, 273, 336, 453
SfaNI	GCATC	4 cut(s)	3, 119, 163, 373
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	2 cut(s)	255, 442
SspMI	CTAG	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	414
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	255, 442
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	75, 143, 183, 186
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	2 cut(s)	255, 442
XceI	RCATGY	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.