Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004851.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1317

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

gtatgtcgcagtaggcaatgaaccctttctcaaagcatacaatggcacctatttaaagactacattaccagccctgaagaacatccaggaagctctcaaccgcgccgggcttggctcacaggtcaaagccacagtgcccttcaatgctgacatctacttctcccctgactcaaacccagttccatccacaggcgactttcggcctgaacttaaagacaatgtgattgagatagtccaatacctatataccaatgaggctccattcacagtcaacatctacccttttctgagcctctatggaaatgcctatttccctttcgaatttgctttctttgatggaacaagcaagcccattagagatggtgacctgctctacaccaatgtgtttgatgcaaacttggacacccttgtttggtctctaaccaaagctgggttccctgaaatgaagatcatagtcggagaggtgggttggccaactgatggagttgtaaatgccaatatcccaaatgccaaaagatttaatcagggaatgcttaaacatgcagggacttgtagctgtggaaggtgtggattatatgtccaaaaggtggtgtgtgctgaatccagaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

203

Amino Acids

22.38

Weight (kDa)

5.44

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 197	3e-30	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	2 cut(s)	480, 587
AccII	CGCG	1 cut(s)	103
AciI	CCGC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	96
AfiI	CCNNNNNNNGG	5 cut(s)	189, 412, 430, 480, 587
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	93, 429, 556
AluI	AGCT	3 cut(s)	93, 429, 556
Alw26I	GTCTC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	201, 471
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	375
AsuII	TTCGAA	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	45
BccI	CCATC	4 cut(s)	191, 330, 354, 474
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	421
BfuAI	ACCTGC	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	87, 107
BmiI	GGNNCC	3 cut(s)	47, 259, 435
BmrFI	CCNGG	2 cut(s)	87, 107
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 412, 430, 480, 587
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	82, 183
BseLI	CCNNNNNNNGG	5 cut(s)	189, 412, 430, 480, 587
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	203, 473
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	5 cut(s)	189, 412, 430, 480, 587
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	203, 473
Bso31I	GGTCTC	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	203, 473
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	47, 259, 435
BspMI	ACCTGC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	134, 269
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	82, 183
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	448
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	543
BstPI	GGTNACC	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	85, 105
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	203, 473
BtsCI	GGATG	2 cut(s)	82, 183
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	105
CviAII	CATG	1 cut(s)	540
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraI	TTTAAA	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	543
FaiI	YATR	9 cut(s)	4, 38, 245, 247, 298, 453, 541, 575, 577
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	1 cut(s)	539
FokI	GGATG	2 cut(s)	69, 170
GlaI	GCGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	203, 473
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	543
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	2 cut(s)	168, 600
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	289, 459
Hpy188III	TCNNGA	1 cut(s)	604
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	149, 556
HpyCH4III	ACNGT	2 cut(s)	134, 269
HpyCH4V	TGCA	2 cut(s)	393, 543
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	543
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	263
LweI	GCATC	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	89, 458
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	4 cut(s)	248, 303, 455, 600
Mox20I	TGGCCA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	4 cut(s)	54, 211, 520, 535
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	87, 107
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	103
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	543
NlaIV	GGNNCC	3 cut(s)	47, 259, 435
NmuCI	GTSAC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	543
NspV	TTCGAA	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	381
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	600
PflMI	CCANNNNNTGG	2 cut(s)	480, 587
PfoI	TCCNGGA	1 cut(s)	85
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	47, 259, 435
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	54, 211, 520, 535
Sau3AI	GATC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	87, 107
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	380
SfuI	TTCGAA	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	85, 105
TaaI	ACNGT	2 cut(s)	134, 269
TaqI	TCGA	1 cut(s)	319
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	4 cut(s)	54, 211, 520, 535
Tru9I	TTAA	4 cut(s)	54, 211, 520, 535
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	2 cut(s)	34, 459
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	2 cut(s)	480, 587
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.