Rmu_sc0004861.1_g000011

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004861.1
N/A
Physical Location & Seq
Reverse (-)
35618 .. 35983
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
atgatggtgctagaaaagaaatcaagggaaataggaattgagaggcataaccagaatttaaagaaggaagtaaatagagtagaagtggaaatttcaaaggattcaaagatgttgcaattggttctaagtatggagcaatttactccatacaccagggagagtttcggccactattatccagtttgccccgagcccgcattaactctcagggcaaccaagcactccgatttctcctttctcactttgttcctacaagatagtcgtggtggcctccaagttcttcataaaaatgtttgggttgaagtgcccccagtgccaggagctttggttgcagttggaaatatgggtgactggatgcatgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.88

Weight (kDa)

6.97

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 57 - 117 2.4e-14 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 55, 90
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 96, 105, 302
AjnI CCWGG 2 cut(s) 152, 316
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 2 cut(s) 166, 268
ApoI RAATTY 2 cut(s) 55, 90
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 154, 318
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 154, 318
BmeT110I CYCGRG 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 154, 318
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 179, 311, 356
BseBI CCWGG 2 cut(s) 154, 318
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 3 cut(s) 179, 311, 356
BseSI GKGCMC 1 cut(s) 309
BshFI GGCC 2 cut(s) 168, 270
BsiHKCI CYCGRG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 317
BsnI GGCC 2 cut(s) 168, 270
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 195, 309
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 168, 270
BspCNI CTCAG 1 cut(s) 219
BsrI ACTGG 3 cut(s) 179, 311, 356
BssECI CCNNGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 154, 318
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 125, 206
BstF5I GGATG 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 313, 329
BstNI CCWGG 2 cut(s) 154, 318
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 152, 316
BstSLI GKGCMC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 168, 270
BtsCI GGATG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 195
CviAII CATG 1 cut(s) 359
CviJI RGCY 4 cut(s) 168, 193, 270, 323
CviKI_1 RGCY 4 cut(s) 168, 193, 270, 323
DdeI CTNAG 2 cut(s) 125, 206
DraI TTTAAA 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 152, 316
EcoT22I ATGCAT 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 48, 131, 148, 285, 344, 360
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 1 cut(s) 11
HaeIII GGCC 2 cut(s) 168, 270
Hin1II CATG 1 cut(s) 362
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 115, 332, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 329
HpyF3I CTNAG 2 cut(s) 125, 206
Hsp92II CATG 1 cut(s) 362
LmnI GCTCC 2 cut(s) 133, 320
LpnPI CCDG 9 cut(s) 65, 139, 166, 192, 193, 303, 324, 330, 337
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 347
MboII GAAGA 1 cut(s) 272
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 195, 309
MluCI AATT 5 cut(s) 36, 55, 90, 116, 137
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 2 cut(s) 36, 281
Mph1103I ATGCAT 1 cut(s) 360
MseI TTAA 2 cut(s) 59, 200
MslI CAYNNNNRTG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 154, 318
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 2 cut(s) 154, 318
MwoI GCNNNNNNNGC 2 cut(s) 313, 329
NlaIII CATG 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 152, 316
PspGI CCWGG 2 cut(s) 152, 316
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 59, 200
ScrFI CCNGG 2 cut(s) 154, 318
SduI GDGCHC 2 cut(s) 195, 309
SetI ASST 1 cut(s) 325
SfaNI GCATC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 5 cut(s) 36, 55, 90, 116, 137
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 152, 316
TasI AATT 5 cut(s) 36, 55, 90, 116, 137
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 59, 200
Tru9I TTAA 2 cut(s) 59, 200
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 318
XapI RAATTY 2 cut(s) 55, 90
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.