Rmu_sc0004871.1_g000006

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004871.1
OG0031324
Physical Location & Seq
Forward (+)
9979 .. 13187
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
atgattgccgcgaaacgtggctggatgggagtggttgggagggtgaggtggaacttggatggggcggtgttcgtgattggtcggtttcatgctcgcgccattattcaccaccaccatgtggtttttgatctgttcatttatctcggcgccaaagccctgcaactgatcaacgacgatctctttcaaagccaacacaacacttactcacctcttggctttctcttcctctctgtgattctacctcgatcaactaagctcaatatcatagccatgggccgcaatattgaagttggagggtttgctgccaaggactaccatgacccaccgccaacaccattgatcgatccggaggagttcggaaaatggtccttttacagagccatcattgcagaattcatcgctacacttttgttcctgtatatcagtgtgctcactgtgattggatacaagagccagagtgacactctcaaaggtggagaccaatgtggtggtgttggcattcttggcattgcttgggcctttggtggcatgatctttgtccttgtttactgcactgctggaatctctggagggcacataaaccctgctgtgacatttgggctgtttttggctaggaaggtgtcattacccagagctgtattgtatattgtggctcaatccttgggagcaatatgtgggtgtgggcttgtgaaatcattccagagtgctttgtacaccaactatggtggtggagctaatgggctagctgatgggtacagcaaaggcactggattggctgctgagattattggcacctttgttcttgtctacactgtcttctctgccactgatcccaagagaaatgcaagggattcccatgtcccagtattggcaccactaccaattgggtttgctgtgttcatggttcaccttgccacaatcccaatcactggcacagggatcaacccggctcgaagtttcggagctgcagtgatatacaacaatgagaaggcttgggatgaccattggatcttctgggttggacccttcattggtgcagccattgccgctttgtatcaccaaaagatattgagagcaggagctgctaaggcttcgggaaaaccaacgagccgatccgactcgtcgtcgactcccctgatctacgatcctgccgaggaagcaccggcatctccaccgagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

393

Amino Acids

42.1

Weight (kDa)

9.03

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 119 - 353 5.2e-85 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031324)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004871.1_g000006 Rmu_sc0023152.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 146, 791, 871
AccB7I CCANNNNNTGG 2 cut(s) 118, 929
AccI GTMKAC 2 cut(s) 807, 1127
AccII CGCG 2 cut(s) 11, 96
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 5 cut(s) 9, 65, 277, 326, 1047
AclWI GGATC 6 cut(s) 338, 824, 947, 1016, 1107, 1139
AcsI RAATTY 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 2 cut(s) 713, 755
AfiI CCNNNNNNNGG 4 cut(s) 118, 868, 929, 1031
AgsI TTSAA 2 cut(s) 185, 287
AhdI GACNNNNNGTC 1 cut(s) 1123
AluBI AGCT 6 cut(s) 256, 635, 734, 746, 965, 1082
AluI AGCT 6 cut(s) 256, 635, 734, 746, 965, 1082
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 6 cut(s) 338, 824, 947, 1016, 1107, 1139
AlwNI CAGNNNCTG 1 cut(s) 1082
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 2 cut(s) 274, 516
ApeKI GCWGC 5 cut(s) 302, 776, 965, 1037, 1082
ApoI RAATTY 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 695
AspLEI GCGC 2 cut(s) 98, 149
AspS9I GGNCC 4 cut(s) 274, 366, 516, 1022
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 5 cut(s) 55, 98, 198, 899, 1049
AsuNHI GCTAGC 1 cut(s) 742
AvaII GGWCC 2 cut(s) 366, 1022
BaeGI GKGCMC 1 cut(s) 576
BanI GGYRCC 3 cut(s) 146, 791, 871
BbsI GAAGAC 1 cut(s) 808
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 5 cut(s) 289, 763, 952, 1049, 1069
BccI CCATC 4 cut(s) 19, 53, 389, 743
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 612, 743
BfmI CTRYAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 150
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 8 cut(s) 9, 277, 303, 777, 966, 1038, 1047, 1083
BlsI GCNGC 8 cut(s) 10, 278, 304, 778, 967, 1039, 1048, 1084
Bme1390I CCNGG 1 cut(s) 947
Bme18I GGWCC 2 cut(s) 366, 1022
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmgT120I GGNCC 4 cut(s) 274, 366, 516, 1022
BmiI GGNNCC 4 cut(s) 148, 793, 873, 1024
BmrFI CCNGG 1 cut(s) 947
BmrI ACTGGG 1 cut(s) 857
BmsI GCATC 1 cut(s) 1175
BmtI GCTAGC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 857
BpiI GAAGAC 1 cut(s) 808
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 1086
BpuMI CCSGG 1 cut(s) 947
Bsa29I ATCGAT 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 4 cut(s) 270, 306, 660, 1152
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 868, 929, 1031
Bse118I RCCGGY 1 cut(s) 1162
Bse1I ACTGG 3 cut(s) 772, 863, 934
Bse3DI GCAATG 3 cut(s) 384, 507, 1041
BseAI TCCGGA 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 270, 306, 660, 1152
BseGI GGATG 3 cut(s) 30, 64, 1003
BseLI CCNNNNNNNGG 4 cut(s) 118, 868, 929, 1031
BseMI GCAATG 3 cut(s) 384, 507, 1041
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 3 cut(s) 772, 863, 934
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 5 cut(s) 289, 763, 952, 1049, 1069
BsgI GTGCAG 2 cut(s) 535, 1056
Bsh1236I CGCG 2 cut(s) 11, 96
BshFI GGCC 2 cut(s) 276, 518
BshNI GGYRCC 3 cut(s) 146, 791, 871
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 3 cut(s) 347, 947, 1163
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 4 cut(s) 118, 868, 929, 1031
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 2 cut(s) 276, 518
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 432, 576
Bsp13I TCCGGA 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 5 cut(s) 9, 65, 277, 326, 1047
BspANI GGCC 2 cut(s) 276, 518
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 2 cut(s) 11, 96
BspLI GGNNCC 4 cut(s) 148, 793, 873, 1024
BspMAI CTGCAG 1 cut(s) 970
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 6 cut(s) 338, 824, 947, 1016, 1107, 1139
BspT107I GGYRCC 3 cut(s) 146, 791, 871
BspTNI GGTCTC 1 cut(s) 471
BsrDI GCAATG 3 cut(s) 384, 507, 1041
BsrFI RCCGGY 1 cut(s) 1162
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 3 cut(s) 772, 863, 934
BssAI RCCGGY 1 cut(s) 1162
BssECI CCNNGG 4 cut(s) 270, 306, 660, 1152
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 270, 306, 660
Bst4CI ACNGT 2 cut(s) 436, 814
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 147
BstAPI GCANNNNNTGC 2 cut(s) 1043, 1082
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 94, 744
BstDEI CTNAG 3 cut(s) 252, 780, 1086
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 30, 64, 1003
BstFNI CGCG 2 cut(s) 11, 96
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 98, 149
BstMAI GTCTC 1 cut(s) 471
BstMWI GCNNNNNNNGC 7 cut(s) 386, 504, 1043, 1046, 1082, 1088, 1157
BstSCI CCNGG 1 cut(s) 945
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 1 cut(s) 576
BstUI CGCG 2 cut(s) 11, 96
BstV1I GCAGC 5 cut(s) 289, 763, 952, 1049, 1069
BstV2I GAAGAC 1 cut(s) 808
BstX2I RGATCY 1 cut(s) 1008
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 1008
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 276, 518
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 382
BtsCI GGATG 3 cut(s) 30, 64, 1003
BtsI GCAGTG 2 cut(s) 552, 975
BtsIMutI CAGTG 8 cut(s) 430, 432, 552, 765, 810, 825, 927, 975
Cac8I GCNNGC 2 cut(s) 94, 744
CaiI CAGNNNCTG 1 cut(s) 1082
CfoI GCGC 2 cut(s) 98, 149
Cfr10I RCCGGY 1 cut(s) 1162
Cfr13I GGNCC 4 cut(s) 274, 366, 516, 1022
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 712, 754
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 7 cut(s) 89, 116, 271, 317, 529, 857, 901
CviQI GTAC 2 cut(s) 712, 754
DdeI CTNAG 3 cut(s) 252, 780, 1086
DinI GGCGCC 1 cut(s) 148
DraIII CACNNNGTG 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 1123
Eam1104I CTCTTC 1 cut(s) 227
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 270, 306, 660
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 366, 1022
EcoRI GAATTC 1 cut(s) 392
EcoT14I CCWWGG 3 cut(s) 270, 306, 660
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
ErhI CCWWGG 3 cut(s) 270, 306, 660
FaeI CATG 7 cut(s) 92, 119, 274, 320, 532, 860, 904
FaqI GGGAC 1 cut(s) 845
FatI CATG 7 cut(s) 88, 115, 270, 316, 528, 856, 900
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 2 cut(s) 807, 1127
Fnu4HI GCNGC 8 cut(s) 9, 277, 303, 777, 966, 1038, 1047, 1083
FokI GGATG 3 cut(s) 37, 71, 1010
Fsp4HI GCNGC 8 cut(s) 9, 277, 303, 777, 966, 1038, 1047, 1083
FspBI CTAG 2 cut(s) 612, 743
GlaI GCGC 2 cut(s) 97, 148
GluI GCNGC 8 cut(s) 9, 277, 303, 777, 966, 1038, 1047, 1083
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 2 cut(s) 276, 518
HapII CCGG 3 cut(s) 347, 947, 1163
HhaI GCGC 2 cut(s) 98, 149
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 7 cut(s) 92, 119, 274, 320, 532, 860, 904
Hin6I GCGC 2 cut(s) 96, 147
HinP1I GCGC 2 cut(s) 96, 147
HincII GTYRAC 1 cut(s) 1128
HindII GTYRAC 1 cut(s) 1128
HinfI GANTC 5 cut(s) 235, 561, 851, 1118, 1129
HpaII CCGG 3 cut(s) 347, 947, 1163
HphI GGTGA 5 cut(s) 55, 98, 198, 899, 1049
Hpy166II GTNNAC 5 cut(s) 547, 714, 808, 907, 1128
Hpy188I TCNGA 3 cut(s) 359, 962, 1117
Hpy188III TCNNGA 5 cut(s) 73, 347, 567, 700, 1095
Hpy8I GTNNAC 5 cut(s) 547, 714, 808, 907, 1128
Hpy99I CGWCG 3 cut(s) 176, 1126, 1129
HpyAV CCTTC 3 cut(s) 610, 982, 1036
HpyCH4III ACNGT 2 cut(s) 436, 814
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 6 cut(s) 160, 389, 552, 845, 968, 1037
HpyF10VI GCNNNNNNNGC 7 cut(s) 386, 504, 1043, 1046, 1082, 1088, 1157
HpyF3I CTNAG 3 cut(s) 252, 780, 1086
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 7 cut(s) 92, 119, 274, 320, 532, 860, 904
HspAI GCGC 2 cut(s) 96, 147
KasI GGCGCC 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 165
LmnI GCTCC 4 cut(s) 665, 731, 962, 1079
Lsp1109I GCAGC 5 cut(s) 289, 763, 952, 1049, 1069
LweI GCATC 1 cut(s) 1175
MaeI CTAG 2 cut(s) 612, 743
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 458, 589
MboII GAAGA 3 cut(s) 214, 808, 1003
MfeI CAATTG 1 cut(s) 882
MflI RGATCY 1 cut(s) 1008
MhlI GDGCHC 2 cut(s) 432, 576
MluCI AATT 2 cut(s) 392, 882
Mly113I GGCGCC 1 cut(s) 147
MlyI GAGTC 2 cut(s) 1112, 1123
MmeI TCCRAC 3 cut(s) 271, 1000, 1140
MnlI CCTC 9 cut(s) 33, 39, 219, 236, 252, 287, 343, 563, 1147
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 695
MslI CAYNNNNRTG 2 cut(s) 114, 269
MspI CCGG 3 cut(s) 347, 947, 1163
MspR9I CCNGG 1 cut(s) 947
MunI CAATTG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 498
MvnI CGCG 2 cut(s) 11, 96
MwoI GCNNNNNNNGC 7 cut(s) 386, 504, 1043, 1046, 1082, 1088, 1157
NarI GGCGCC 1 cut(s) 147
NciI CCSGG 1 cut(s) 947
NcoI CCATGG 1 cut(s) 270
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 7 cut(s) 92, 119, 274, 320, 532, 860, 904
NlaIV GGNNCC 4 cut(s) 148, 793, 873, 1024
NmeAIII GCCGAG 2 cut(s) 123, 1177
NmuCI GTSAC 2 cut(s) 458, 589
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 3 cut(s) 235, 561, 851
PflMI CCANNNNNTGG 2 cut(s) 118, 929
PkrI GCNGC 8 cut(s) 10, 278, 304, 778, 967, 1039, 1048, 1084
PleI GAGTC 2 cut(s) 1112, 1123
PluTI GGCGCC 1 cut(s) 150
PpsI GAGTC 2 cut(s) 1112, 1123
PspN4I GGNNCC 4 cut(s) 148, 793, 873, 1024
PspPI GGNCC 4 cut(s) 274, 366, 516, 1022
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 1008
RsaI GTAC 2 cut(s) 713, 755
RsaNI GTAC 2 cut(s) 712, 754
RseI CAYNNNNRTG 2 cut(s) 114, 269
SalI GTCGAC 1 cut(s) 1126
SatI GCNGC 8 cut(s) 9, 277, 303, 777, 966, 1038, 1047, 1083
Sau96I GGNCC 4 cut(s) 274, 366, 516, 1022
SchI GAGTC 2 cut(s) 1112, 1123
ScrFI CCNGG 1 cut(s) 947
SduI GDGCHC 2 cut(s) 432, 576
SfaNI GCATC 1 cut(s) 1175
SfcI CTRYAG 1 cut(s) 966
SfoI GGCGCC 1 cut(s) 148
SinI GGWCC 2 cut(s) 366, 1022
SmiMI CAYNNNNRTG 2 cut(s) 114, 269
Sse9I AATT 2 cut(s) 392, 882
SsiI CCGC 5 cut(s) 9, 65, 277, 326, 1047
SspDI GGCGCC 1 cut(s) 146
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 612, 743
StyD4I CCNGG 1 cut(s) 945
StyI CCWWGG 3 cut(s) 270, 306, 660
TaaI ACNGT 2 cut(s) 436, 814
TaiI ACGT 1 cut(s) 19
TaqI TCGA 4 cut(s) 244, 342, 952, 1127
TasI AATT 2 cut(s) 392, 882
TatI WGTACW 1 cut(s) 711
TauI GCSGC 3 cut(s) 11, 279, 1049
TfiI GAWTC 3 cut(s) 235, 561, 851
TscAI CASTG 8 cut(s) 430, 439, 559, 772, 817, 832, 934, 975
TseFI GTSAC 2 cut(s) 458, 589
TseI GCWGC 5 cut(s) 302, 776, 965, 1037, 1082
Tsp45I GTSAC 2 cut(s) 458, 589
TspDTI ATGAA 5 cut(s) 77, 124, 385, 889, 1018
TspRI CASTG 8 cut(s) 430, 439, 559, 772, 817, 832, 934, 975
Van91I CCANNNNNTGG 2 cut(s) 118, 929
VpaK11BI GGWCC 2 cut(s) 366, 1022
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 2 cut(s) 807, 1127
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 2 cut(s) 612, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.