Rmu_sc0004876.1_g000013

transport protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004876.1
N/A
Physical Location & Seq
Forward (+)
65076 .. 69038
3963 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atgggtgcagtggaggtgctgggtagcagggcaatagcaagagtggtggataattatgttcctccttcaattgcagagttgggtaattgcttgtgtttacccaatttcattttaaatggatatgaaggaaggaagttctcagcctctgaggctcggtattttgtatcacggctcattcctgcgcacaaggatcctccttatgagcaggaggcaagatttcctcagctacgaactttgataatcgaacagcgcacaaagctgaaaagcagtttaattagttttgatgatcctagcttctgtgagtgggtacgaagcttgagagtggttcccccagaaccaagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

114

Amino Acids

12.87

Weight (kDa)

7.71

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AclWI GGATC 3 cut(s) 185, 198, 281
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 1 cut(s) 69
AluBI AGCT 4 cut(s) 226, 259, 294, 315
AluI AGCT 4 cut(s) 226, 259, 294, 315
AlwI GGATC 3 cut(s) 185, 198, 281
AlwNI CAGNNNCTG 1 cut(s) 146
AspLEI GCGC 2 cut(s) 184, 252
BamHI GGATCC 1 cut(s) 190
BbvCI CCTCAGC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 185
BfaI CTAG 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 192, 327
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 138, 153, 236
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 27
Bsp143I GATC 2 cut(s) 190, 286
BspCNI CTCAG 3 cut(s) 139, 152, 235
BspLI GGNNCC 2 cut(s) 192, 327
BspPI GGATC 3 cut(s) 185, 198, 281
BssMI GATC 2 cut(s) 190, 286
BstDEI CTNAG 3 cut(s) 139, 147, 222
BstHHI GCGC 2 cut(s) 184, 252
BstKTI GATC 2 cut(s) 193, 289
BstMBI GATC 2 cut(s) 190, 286
BstMWI GCNNNNNNNGC 2 cut(s) 149, 256
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 146
CfoI GCGC 2 cut(s) 184, 252
Csp6I GTAC 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviJI RGCY 7 cut(s) 143, 152, 172, 226, 259, 294, 315
CviKI_1 RGCY 7 cut(s) 143, 152, 172, 226, 259, 294, 315
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 3 cut(s) 139, 147, 222
DpnI GATC 2 cut(s) 192, 288
DpnII GATC 2 cut(s) 190, 286
DraI TTTAAA 1 cut(s) 114
FaiI YATR 3 cut(s) 57, 123, 201
FspBI CTAG 1 cut(s) 291
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 2 cut(s) 183, 251
GsaI CCCAGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 184, 252
Hin6I GCGC 2 cut(s) 182, 250
HinP1I GCGC 2 cut(s) 182, 250
HindIII AAGCTT 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 75, 119, 123
HpyCH4V TGCA 2 cut(s) 8, 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 256
HpyF3I CTNAG 3 cut(s) 139, 147, 222
HspAI GCGC 2 cut(s) 182, 250
Kzo9I GATC 2 cut(s) 190, 286
LpnPI CCDG 4 cut(s) 5, 13, 191, 192
MaeI CTAG 1 cut(s) 291
MalI GATC 2 cut(s) 192, 288
MboI GATC 2 cut(s) 190, 286
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 190
MluCI AATT 5 cut(s) 52, 69, 85, 103, 273
MnlI CCTC 7 cut(s) 7, 72, 142, 154, 202, 204, 231
MseI TTAA 2 cut(s) 113, 272
MunI CAATTG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 149, 256
NdeII GATC 2 cut(s) 190, 286
NlaIV GGNNCC 2 cut(s) 192, 327
NsbI TGCGCA 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 192, 327
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 2 cut(s) 113, 272
Sau3AI GATC 2 cut(s) 190, 286
SetI ASST 5 cut(s) 18, 228, 261, 296, 317
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 5 cut(s) 52, 69, 85, 103, 273
SspMI CTAG 1 cut(s) 291
TaqI TCGA 1 cut(s) 243
TasI AATT 5 cut(s) 52, 69, 85, 103, 273
Tru1I TTAA 2 cut(s) 113, 272
Tru9I TTAA 2 cut(s) 113, 272
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 97, 138
TspRI CASTG 1 cut(s) 15
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.