Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004885.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 742

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

gtacaacaaaaaatcatggcaagaggagatatgacagcagaggaggaaattgcagatgctgtatttgtgcaggtgatgagactgcaactgcgatattcacttgttctttccttttcctcttatttccagtcatacattccaaagacgctagataacgtgaagaatgcggaggcagacgtaatacgattaaccagtggtgaggacactggagacatgtactataaaactattacaggattaaaggaggctcttccaaaaggccaaccagctccacctgagaaagatcaggaacatgatggtaatgccctggaagagtccttggtcgatccggttggtggtccagaagctcatgagaccgagtctgactccggtacagatgaagaaagctcaagtgactcagaagggaattccccatcaaaatccaaggcacaggatcctcttgataagaaagctgctagaaaagagaacaagaagaaagtgaaagaagagaagagggaagctcggaaaactaaagtgccgaaggctgataagaagagaaagaaaaagatagccaaagcccacaagactagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

7.94

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	3 cut(s)	320, 428, 441
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	3 cut(s)	3, 218, 373
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	5 cut(s)	269, 347, 387, 452, 500
AluI	AGCT	5 cut(s)	269, 347, 387, 452, 500
Alw26I	GTCTC	3 cut(s)	73, 204, 347
AlwI	GGATC	3 cut(s)	320, 428, 441
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	85, 209
AvaII	GGWCC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	2 cut(s)	290, 421
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	73, 204, 347
BfaI	CTAG	3 cut(s)	149, 456, 567
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	46
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 484, 516
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	306, 318, 423
BsaWI	WCCGGW	2 cut(s)	328, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	127, 192, 211
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	306, 318, 423
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	267, 411
BseNI	ACTGG	3 cut(s)	127, 192, 211
BseRI	GAGGAG	2 cut(s)	39, 56
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	329, 369
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	3 cut(s)	73, 204, 347
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	283, 325, 433
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	268, 410
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	320, 428, 441
BspQI	GCTCTTC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	127, 192, 211
BssECI	CCNNGG	3 cut(s)	306, 318, 423
BssMI	GATC	3 cut(s)	283, 325, 433
BssT1I	CCWWGG	2 cut(s)	318, 423
Bst2UI	CCWGG	1 cut(s)	308
Bst6I	CTCTTC	5 cut(s)	255, 306, 480, 485, 527
BstDEI	CTNAG	2 cut(s)	276, 397
BstKTI	GATC	3 cut(s)	286, 328, 436
BstMAI	GTCTC	3 cut(s)	73, 204, 347
BstMBI	GATC	3 cut(s)	283, 325, 433
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	199, 204
BveI	ACCTGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	2, 217, 372
CviAII	CATG	4 cut(s)	16, 214, 293, 350
CviQI	GTAC	3 cut(s)	2, 217, 372
DdeI	CTNAG	2 cut(s)	276, 397
DpnI	GATC	3 cut(s)	285, 327, 435
DpnII	GATC	3 cut(s)	283, 325, 433
Eam1104I	CTCTTC	5 cut(s)	255, 306, 480, 485, 527
EarI	CTCTTC	5 cut(s)	255, 306, 480, 485, 527
Eco130I	CCWWGG	2 cut(s)	318, 423
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	318, 423
ErhI	CCWWGG	2 cut(s)	318, 423
FaeI	CATG	4 cut(s)	19, 217, 296, 353
FaiI	YATR	7 cut(s)	17, 32, 133, 215, 222, 294, 351
FatI	CATG	4 cut(s)	15, 213, 292, 349
Fnu4HI	GCNGC	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	3 cut(s)	149, 456, 567
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	2 cut(s)	329, 369
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	19, 217, 296, 353
HinfI	GANTC	4 cut(s)	314, 359, 365, 395
HpaII	CCGG	2 cut(s)	329, 369
HphI	GGTGA	2 cut(s)	85, 209
Hpy188I	TCNGA	3 cut(s)	364, 400, 504
Hpy188III	TCNNGA	4 cut(s)	287, 341, 350, 440
HpyAV	CCTTC	2 cut(s)	395, 514
HpyCH4IV	ACGT	2 cut(s)	156, 177
HpyCH4V	TGCA	3 cut(s)	53, 70, 85
HpyF3I	CTNAG	2 cut(s)	276, 397
HpySE526I	ACGT	2 cut(s)	156, 177
Hsp92II	CATG	4 cut(s)	19, 217, 296, 353
Kzo9I	GATC	3 cut(s)	283, 325, 433
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	149, 456, 567
MaeII	ACGT	2 cut(s)	156, 177
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	3 cut(s)	285, 327, 435
MboI	GATC	3 cut(s)	283, 325, 433
MboII	GAAGA	8 cut(s)	172, 242, 323, 392, 484, 497, 502, 544
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	2 cut(s)	48, 406
MlyI	GAGTC	4 cut(s)	323, 359, 368, 389
MnlI	CCTC	9 cut(s)	17, 34, 37, 127, 163, 193, 238, 447, 486
MseI	TTAA	2 cut(s)	188, 239
MspI	CCGG	2 cut(s)	329, 369
MspR9I	CCNGG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	283, 325, 433
NlaIII	CATG	4 cut(s)	19, 217, 296, 353
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	61
PciI	ACATGT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	4 cut(s)	322, 359, 367, 389
PpsI	GAGTC	4 cut(s)	322, 359, 367, 389
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	3 cut(s)	3, 218, 373
RsaNI	GTAC	3 cut(s)	2, 217, 372
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	188, 239
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	283, 325, 433
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	4 cut(s)	323, 359, 368, 389
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	9 cut(s)	75, 159, 180, 271, 277, 349, 389, 454, 502
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	2 cut(s)	48, 406
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	3 cut(s)	149, 456, 567
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	318, 423
TaiI	ACGT	2 cut(s)	159, 180
TaqI	TCGA	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	48, 406
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	188, 239
Tru9I	TTAA	2 cut(s)	188, 239
TscAI	CASTG	2 cut(s)	199, 211
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	199, 211
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	3 cut(s)	149, 456, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.