Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004890.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

77013 .. 79097

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggctggtgtgtctcagttgcagaagcagtttgttgactacaaagcctcactctttcaagagggggttctggatgaacagtttgaccaacttcagggactacaagatgagagcaacccaaattttgtggttgaagtggtgtctctcttctttcaagattctgagaggcttctcaatgaccccaagactctaaaccagcagggtgttgacttcaaaaaggtcggtgccaatgttcatcagttgaagggtagcagctccaggttttctgaggcaaagaaagagataagagcaaaaggaatgagacatgtgcaattgatggagaatcgtgggctgttgatgaatcaaggaaggttaaggcaacatgaagaaaaagatattcaacaattaattctcttggctgatcctattggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

137

Amino Acids

15.61

Weight (kDa)

5.91

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	59, 134, 155, 214, 244, 380
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw26I	GTCTC	3 cut(s)	18, 147, 295
AlwI	GGATC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	121
AseI	ATTAAT	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	18, 147, 295
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	29, 153, 258
BseXI	GCAGC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	3 cut(s)	18, 147, 295
BsmFI	GGGAC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	400
BspCNI	CTCAG	3 cut(s)	28, 154, 259
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	224
BssMI	GATC	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	15, 162, 267
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	3 cut(s)	18, 147, 295
BstMBI	GATC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	2 cut(s)	305, 362
CviJI	RGCY	6 cut(s)	5, 47, 169, 255, 331, 398
CviKI_1	RGCY	6 cut(s)	5, 47, 169, 255, 331, 398
DdeI	CTNAG	3 cut(s)	15, 162, 267
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	257
FaeI	CATG	2 cut(s)	308, 365
FaiI	YATR	2 cut(s)	306, 363
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	2 cut(s)	304, 361
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	241
Hin1II	CATG	2 cut(s)	308, 365
HincII	GTYRAC	2 cut(s)	37, 208
HindII	GTYRAC	2 cut(s)	37, 208
HinfI	GANTC	4 cut(s)	158, 187, 322, 340
Hpy166II	GTNNAC	2 cut(s)	37, 208
Hpy188I	TCNGA	2 cut(s)	163, 268
Hpy188III	TCNNGA	3 cut(s)	59, 71, 155
Hpy8I	GTNNAC	2 cut(s)	37, 208
HpyAV	CCTTC	2 cut(s)	238, 342
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	22, 310
HpyF3I	CTNAG	3 cut(s)	15, 162, 267
Hsp92II	CATG	2 cut(s)	308, 365
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	6 cut(s)	56, 80, 185, 209, 244, 271
Lsp1109I	GCAGC	1 cut(s)	264
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	139, 377
MfeI	CAATTG	1 cut(s)	311
MluCI	AATT	4 cut(s)	121, 311, 383, 387
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	55, 58, 159, 262
MseI	TTAA	2 cut(s)	353, 386
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	308, 365
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	308
PciI	ACATGT	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	158, 322, 340
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	353, 386
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	4 cut(s)	222, 257, 263, 353
Sse9I	AATT	4 cut(s)	121, 311, 383, 387
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	4 cut(s)	121, 311, 383, 387
TfiI	GAWTC	3 cut(s)	158, 322, 340
Tru1I	TTAA	2 cut(s)	353, 386
Tru9I	TTAA	2 cut(s)	353, 386
TseI	GCWGC	1 cut(s)	252
TspDTI	ATGAA	4 cut(s)	90, 224, 353, 378
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.