Rmu_sc0004908.1_g000017

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004908.1
N/A
Physical Location & Seq
Reverse (-)
98598 .. 99089
492 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ctgccatcctcctctccctcatctacggcctttgccgccgctcgatcgacgccaccttctgcatccccaagatcttctgatctgagccggcgctcgcctagacgaaattggcttcaatactgttcgaggagctcttcctcatccacctcctcctggttctccaatggtacaatcaccggcgatcgcagattctgccgtcgctgtccccaaatgtcagctatgaaaacgacgacgtttcgatcaacgacatgtcggtggcttttgctgcggggtcaaagtgggaaccagatggaggggttgaaggagatggagagcagctacgagagggttttggatgagaattgtagggttttcagtgagtatttcagggcggttttggagaataaagatggaggaaaagtgattgatccaccggccgtggtgttggaattgagtgaaggaagtgatgagttctggtatgatgatcggagcaccggagaagatgaagcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

163

Amino Acids

18.3

Weight (kDa)

7.79

Isoelectric Point (pI)

86.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 4 cut(s) 36, 39, 268, 371
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 153, 292
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 116, 301
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 132, 218, 318
AluI AGCT 3 cut(s) 132, 218, 318
Alw21I GWGCWC 2 cut(s) 134, 473
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 2 cut(s) 27, 414
ApeKI GCWGC 2 cut(s) 265, 315
AsiSI GCGATCGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 2 cut(s) 134, 473
BbvI GCAGC 2 cut(s) 252, 327
BccI CCATC 4 cut(s) 13, 283, 301, 383
BceAI ACGGC 3 cut(s) 42, 180, 401
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 94
BglII AGATCT 1 cut(s) 71
BisI GCNGC 4 cut(s) 36, 39, 266, 316
BlsI GCNGC 4 cut(s) 37, 40, 267, 317
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 292
Bse118I RCCGGY 3 cut(s) 87, 176, 412
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 4 cut(s) 5, 62, 140, 340
BseLI CCNNNNNNNGG 2 cut(s) 153, 292
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 139, 142
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 252, 327
Bsh1285I CGRYCG 3 cut(s) 47, 184, 417
BshFI GGCC 2 cut(s) 29, 416
BsiEI CGRYCG 3 cut(s) 47, 184, 417
BsiHKAI GWGCWC 2 cut(s) 134, 473
BsiSI CCGG 4 cut(s) 88, 177, 413, 474
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 153, 292
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 2 cut(s) 29, 416
Bsp1286I GDGCHC 2 cut(s) 134, 473
Bsp143I GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
BspACI CCGC 4 cut(s) 36, 39, 268, 371
BspANI GGCC 2 cut(s) 29, 416
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 3 cut(s) 87, 176, 412
BssAI RCCGGY 3 cut(s) 87, 176, 412
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
BssNI GRCGYC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 89, 95
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 4 cut(s) 5, 62, 140, 340
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 7 cut(s) 47, 74, 82, 184, 242, 409, 466
BstMBI GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
BstMCI CGRYCG 3 cut(s) 47, 184, 417
BstMWI GCNNNNNNNGC 3 cut(s) 35, 192, 265
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 252, 327
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 29, 416
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 4 cut(s) 5, 62, 140, 340
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 89, 95
CaiI CAGNNNCTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 3 cut(s) 87, 176, 412
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 249
CviJI RGCY 8 cut(s) 29, 87, 112, 132, 218, 259, 318, 416
CviKI_1 RGCY 8 cut(s) 29, 87, 112, 132, 218, 259, 318, 416
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 83
DpnI GATC 7 cut(s) 46, 73, 81, 183, 241, 408, 465
DpnII GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
EaeI YGGCCR 1 cut(s) 414
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 1 cut(s) 252
FaiI YATR 3 cut(s) 221, 250, 459
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 248
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 36, 39, 266, 316
FokI GGATG 3 cut(s) 49, 127, 347
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 36, 39, 266, 316
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 36, 39, 266, 316
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 29, 416
HapII CCGG 4 cut(s) 88, 177, 413, 474
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 252
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 189
HpaII CCGG 4 cut(s) 88, 177, 413, 474
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 79, 84, 468
Hpy99I CGWCG 4 cut(s) 52, 201, 232, 235
HpyAV CCTTC 3 cut(s) 66, 295, 431
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 192, 265
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 252
HspAI GCGC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 129, 468
LpnPI CCDG 9 cut(s) 101, 139, 166, 190, 299, 352, 426, 439, 487
Lsp1109I GCAGC 2 cut(s) 252, 327
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 233
MalI GATC 7 cut(s) 46, 73, 81, 183, 241, 408, 465
MbiI CCGCTC 1 cut(s) 41
MboI GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
MboII GAAGA 3 cut(s) 66, 126, 491
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 134, 473
MluCI AATT 3 cut(s) 106, 340, 428
MmeI TCCRAC 1 cut(s) 405
MroNI GCCGGC 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 4 cut(s) 88, 177, 413, 474
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 35, 192, 265
NaeI GCCGGC 1 cut(s) 89
NdeII GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 284
NspI RCATGY 1 cut(s) 252
PciI ACATGT 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 4 cut(s) 37, 40, 267, 317
Ple19I CGATCG 2 cut(s) 47, 184
PscI ACATGT 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 71
PvuI CGATCG 2 cut(s) 47, 184
RgaI GCGATCGC 1 cut(s) 184
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 253
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 139
SatI GCNGC 4 cut(s) 36, 39, 266, 316
Sau3AI GATC 7 cut(s) 44, 71, 79, 181, 239, 406, 463
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 2 cut(s) 134, 473
SetI ASST 6 cut(s) 58, 134, 149, 220, 236, 320
SfaAI GCGATCGC 1 cut(s) 184
SfaNI GCATC 1 cut(s) 71
SgfI GCGATCGC 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 3 cut(s) 106, 340, 428
SsiI CCGC 4 cut(s) 36, 39, 268, 371
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 236
TaqI TCGA 4 cut(s) 43, 47, 125, 238
TasI AATT 3 cut(s) 106, 340, 428
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 265, 315
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 361
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.