Rmu_sc0004926.1_g000008

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004926.1
N/A
Physical Location & Seq
Reverse (-)
28447 .. 28659
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
atggccgctgccggcgatcactccgacgtcgaacacgtcttccgcctcttccgcgtccacaaagacggcaccatccaccgaacccatccctccttcgacaaaatcccagccgtcgacgacctcaccaccggcgtccgatccaaagacgtcaccatctccaccgacccacccgtctccgcccgcatctttgttaaactttatgtttttgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

70

Amino Acids

7.85

Weight (kDa)

6.49

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 2 cut(s) 30, 150
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 54
AciI CCGC 5 cut(s) 6, 43, 52, 177, 181
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 27, 132, 147
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 115, 142
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 3 cut(s) 80, 93, 161
BceAI ACGGC 2 cut(s) 82, 95
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 31
BsaHI GRCGYC 3 cut(s) 27, 132, 147
Bse118I RCCGGY 2 cut(s) 11, 128
BseGI GGATG 2 cut(s) 72, 85
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 12, 129
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 16, 137
BspACI CCGC 5 cut(s) 6, 43, 52, 177, 181
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 68
BsrFI RCCGGY 2 cut(s) 11, 128
BssAI RCCGGY 2 cut(s) 11, 128
BssMI GATC 2 cut(s) 16, 137
BssNI GRCGYC 3 cut(s) 27, 132, 147
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 3 cut(s) 27, 132, 147
BstC8I GCNNGC 2 cut(s) 13, 181
BstF5I GGATG 2 cut(s) 72, 85
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 2 cut(s) 19, 140
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 16, 137
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 72, 85
Cac8I GCNNGC 2 cut(s) 13, 181
Cfr10I RCCGGY 2 cut(s) 11, 128
CseI GACGC 2 cut(s) 43, 121
CviJI RGCY 2 cut(s) 5, 110
CviKI_1 RGCY 2 cut(s) 5, 110
DpnI GATC 2 cut(s) 18, 139
DpnII GATC 2 cut(s) 16, 137
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 2 cut(s) 32, 166
Esp3I CGTCTC 1 cut(s) 178
FaiI YATR 1 cut(s) 201
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 59, 72
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 12, 129
HgaI GACGC 2 cut(s) 43, 121
Hin1I GRCGYC 3 cut(s) 27, 132, 147
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 12, 129
HphI GGTGA 2 cut(s) 115, 142
Hpy166II GTNNAC 2 cut(s) 58, 115
Hpy188I TCNGA 2 cut(s) 25, 137
Hpy8I GTNNAC 2 cut(s) 58, 115
Hpy99I CGWCG 4 cut(s) 29, 32, 116, 119
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 3 cut(s) 27, 36, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpySE526I ACGT 3 cut(s) 27, 36, 147
Hsp92I GRCGYC 3 cut(s) 27, 132, 147
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 16, 137
LpnPI CCDG 3 cut(s) 25, 120, 142
LweI GCATC 1 cut(s) 192
MaeII ACGT 3 cut(s) 27, 36, 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 18, 139
MboI GATC 2 cut(s) 16, 137
MboII GAAGA 2 cut(s) 31, 40
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 56, 100, 131
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 12, 129
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 51
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 2 cut(s) 16, 137
NgoMIV GCCGGC 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 7, 10
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 70
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 16, 137
SetI ASST 4 cut(s) 30, 39, 123, 150
SfaNI GCATC 1 cut(s) 192
SgeI CNNG 7 cut(s) 24, 47, 65, 119, 141, 182, 192
SgrAI CRCCGGYG 1 cut(s) 128
SgrDI CGTCGACG 1 cut(s) 113
SsiI CCGC 5 cut(s) 6, 43, 52, 177, 181
TaiI ACGT 3 cut(s) 30, 39, 150
TaqI TCGA 3 cut(s) 30, 96, 114
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 114
ZraI GACGTC 2 cut(s) 28, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.