Rmu_sc0004933.1_g000003

Basic blue protein-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004933.1
N/A
Physical Location & Seq
Reverse (-)
3995 .. 4918
924 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atggcacgagtcagtactactgctcttgttgtgattgccattttcgttgtttttccaagcatggttttggcaaaacaatatattgtcggagacgatcaaggctgggagggtactgttgattatcaagcttgggcagatcgcaaaactttccatgttggagatggtgaatacagggggcctatattgaagcttgcctctggcctcgtcattgtggagtggttgctgccagacgaacggttaacggcgttattacgcaaaagtgctgctaaattttctttacccctcggtggcaaaaacgggtcaatgtcttgtgacgaagtctatgtttttggtggtggttttagaatgggtcgttgttctggtggtgattgcggaggtttcaaggctggcaatggtggaggcttggtggtaggctggaatgatggggtaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

15.29

Weight (kDa)

6.55

Isoelectric Point (pI)

20.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 2 cut(s) 16, 112
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 187, 382
AluBI AGCT 2 cut(s) 128, 190
AluI AGCT 2 cut(s) 128, 190
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 2 cut(s) 176, 199
ApeKI GCWGC 2 cut(s) 223, 263
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 176, 377
BauI CACGAG 1 cut(s) 6
BbvI GCAGC 2 cut(s) 210, 250
BccI CCATC 2 cut(s) 155, 416
BceAI ACGGC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 2 cut(s) 224, 264
BlsI GCNGC 2 cut(s) 225, 265
BmcAI AGTACT 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 397
BseXI GCAGC 2 cut(s) 210, 250
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 178, 201
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 178, 201
Bsp143I GATC 2 cut(s) 94, 136
BspACI CCGC 1 cut(s) 372
BspANI GGCC 2 cut(s) 178, 201
BspLI GGNNCC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 94, 136
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 115, 237
BstC8I GCNNGC 2 cut(s) 192, 388
BstKTI GATC 2 cut(s) 97, 139
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 94, 136
BstV1I GCAGC 2 cut(s) 210, 250
BsuRI GGCC 2 cut(s) 178, 201
Cac8I GCNNGC 2 cut(s) 192, 388
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 15, 111
CviAII CATG 2 cut(s) 61, 152
CviJI RGCY 8 cut(s) 102, 128, 178, 190, 201, 386, 402, 414
CviKI_1 RGCY 8 cut(s) 102, 128, 178, 190, 201, 386, 402, 414
CviQI GTAC 2 cut(s) 15, 111
DpnI GATC 2 cut(s) 96, 138
DpnII GATC 2 cut(s) 94, 136
EcoO109I RGGNCCY 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 2 cut(s) 64, 155
FaiI YATR 5 cut(s) 62, 81, 153, 182, 324
FatI CATG 2 cut(s) 60, 151
Fnu4HI GCNGC 2 cut(s) 224, 264
Fsp4HI GCNGC 2 cut(s) 224, 264
GluI GCNGC 2 cut(s) 224, 264
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 178, 201
Hin1II CATG 2 cut(s) 64, 155
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 2 cut(s) 126, 188
HinfI GANTC 1 cut(s) 9
HpaI GTTAAC 1 cut(s) 240
HphI GGTGA 2 cut(s) 176, 377
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 115, 237
Hsp92II CATG 2 cut(s) 64, 155
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 94, 136
LpnPI CCDG 7 cut(s) 88, 157, 183, 240, 345, 372, 400
Lsp1109I GCAGC 2 cut(s) 210, 250
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 96, 138
MboI GATC 2 cut(s) 94, 136
MluCI AATT 2 cut(s) 269, 430
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 67, 136
MnlI CCTC 6 cut(s) 100, 205, 212, 293, 368, 392
MseI TTAA 1 cut(s) 239
NdeII GATC 2 cut(s) 94, 136
NlaIII CATG 2 cut(s) 64, 155
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 311
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 225, 265
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 2 cut(s) 16, 112
RsaNI GTAC 2 cut(s) 15, 111
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 224, 264
Sau3AI GATC 2 cut(s) 94, 136
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 18
SetI ASST 3 cut(s) 130, 192, 379
Sse9I AATT 2 cut(s) 269, 430
SsiI CCGC 1 cut(s) 372
TaaI ACNGT 2 cut(s) 115, 237
TasI AATT 2 cut(s) 269, 430
TatI WGTACW 1 cut(s) 14
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 223, 263
Tsp45I GTSAC 1 cut(s) 311
Tth111I GACNNNGTC 1 cut(s) 317
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.