Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004964.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

84721 .. 85416

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggaaccacgaactctgcaactaatggagcttcaaacccagcaacacatggaactacaacaacagcaaccaaccgaggagggggaaagcaaccaagcagccgggagtagtgccaacacgcctatcaggccaactaatatccggtgggctcctacaccagctcaactaagaatcctccaggagctttattacgacagggggcttaaaaacccaaatccagagcagattcaggggatctgtctccatctgaagccgtatgggcagatcgagaacaagaacgttttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaaatccggaacgttcgggttggtggatccctcgatctcaaatttggatccacaagttctactgaaggtggcagatccatcgatctcaacttcggttgcaccgattccactggtgatgatggatcgatcgatctaacccttgggttacgatcattcatggaacgacgaggaggagatcaccaggaggtcgagactcttcctctgttccctgagcacggtgaaaacgtccttggtaacctgaagactacttccgaggaaggtagcgcatttggttactattctggtggctcaggcggttacaacagtggttctcctgtttctcttgagctcagcctcaacttatccggagttatcgatttggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

231

Amino Acids

25.58

Weight (kDa)

5.03

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	48 - 107	3.4e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	336, 674
AciI	CCGC	1 cut(s)	624
AclI	AACGTT	2 cut(s)	279, 342
AclWI	GGATC	7 cut(s)	242, 351, 364, 372, 385, 399, 460
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	3 cut(s)	269, 414, 590
AfiI	CCNNNNNNNGG	2 cut(s)	81, 545
AgsI	TTSAA	2 cut(s)	35, 328
AjnI	CCWGG	2 cut(s)	177, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	4 cut(s)	31, 161, 184, 658
AluI	AGCT	4 cut(s)	31, 161, 184, 658
Alw21I	GWGCWC	2 cut(s)	546, 660
Alw26I	GTCTC	2 cut(s)	245, 515
AlwI	GGATC	7 cut(s)	242, 351, 364, 372, 385, 399, 460
Aor13HI	TCCGGA	2 cut(s)	336, 674
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	455, 500, 560
BamHI	GGATCC	2 cut(s)	356, 377
BanII	GRGCYC	2 cut(s)	151, 660
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	2 cut(s)	546, 660
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	3 cut(s)	252, 416, 443
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	2 cut(s)	179, 512
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	245, 515
BglI	GCCNNNNNGGC	2 cut(s)	127, 259
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	103, 179, 512
BmiI	GGNNCC	5 cut(s)	6, 150, 293, 358, 379
BmrFI	CCNGG	3 cut(s)	103, 179, 512
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	2 cut(s)	540, 619
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	287, 674
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	4 cut(s)	411, 455, 459, 684
BsaJI	CCNNGG	4 cut(s)	75, 469, 559, 582
BsaWI	WCCGGW	3 cut(s)	141, 336, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 545
Bse1I	ACTGG	1 cut(s)	445
BseAI	TCCGGA	2 cut(s)	336, 674
BseBI	CCWGG	2 cut(s)	179, 512
BseCI	ATCGAT	4 cut(s)	411, 455, 459, 684
BseDI	CCNNGG	4 cut(s)	75, 469, 559, 582
BseLI	CCNNNNNNNGG	2 cut(s)	81, 545
BseMII	CTCAG	3 cut(s)	531, 633, 673
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	3 cut(s)	92, 513, 516
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	130
BshVI	ATCGAT	4 cut(s)	411, 455, 459, 684
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	546, 660
BsiSI	CCGG	4 cut(s)	102, 142, 337, 675
BslI	CCNNNNNNNGG	2 cut(s)	81, 545
BsmAI	GTCTC	2 cut(s)	245, 515
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	3 cut(s)	151, 546, 660
Bsp13I	TCCGGA	2 cut(s)	336, 674
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	532, 632, 672
BspDI	ATCGAT	4 cut(s)	411, 455, 459, 684
BspEI	TCCGGA	2 cut(s)	336, 674
BspLI	GGNNCC	5 cut(s)	6, 150, 293, 358, 379
BspPI	GGATC	7 cut(s)	242, 351, 364, 372, 385, 399, 460
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	4 cut(s)	75, 469, 559, 582
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	469, 559
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	179, 512
Bst4CI	ACNGT	2 cut(s)	548, 635
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	167, 540, 619, 659
BstEII	GGTNACC	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	596
BstMAI	GTCTC	2 cut(s)	245, 515
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 259
BstNI	CCWGG	2 cut(s)	179, 512
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	101, 177, 510
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	4 cut(s)	234, 356, 377, 404
BstYI	RGATCY	4 cut(s)	234, 356, 377, 404
Bsu15I	ATCGAT	4 cut(s)	411, 455, 459, 684
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	4 cut(s)	411, 455, 459, 684
BtsIMutI	CAGTG	2 cut(s)	438, 640
CfoI	GCGC	1 cut(s)	596
ClaI	ATCGAT	4 cut(s)	411, 455, 459, 684
CviAII	CATG	2 cut(s)	49, 487
DdeI	CTNAG	4 cut(s)	167, 540, 619, 659
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	469, 559
Eco24I	GRGCYC	2 cut(s)	151, 660
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	3 cut(s)	269, 414, 590
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	177, 510
EcoT14I	CCWWGG	2 cut(s)	469, 559
EcoT38I	GRGCYC	2 cut(s)	151, 660
ErhI	CCWWGG	2 cut(s)	469, 559
FaeI	CATG	2 cut(s)	52, 490
FaiI	YATR	3 cut(s)	50, 258, 488
FatI	CATG	2 cut(s)	48, 486
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	2 cut(s)	151, 660
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	102, 142, 337, 675
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	52, 490
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	4 cut(s)	171, 226, 434, 523
HpaII	CCGG	4 cut(s)	102, 142, 337, 675
HphI	GGTGA	3 cut(s)	455, 500, 560
Hpy188I	TCNGA	2 cut(s)	249, 583
Hpy188III	TCNNGA	8 cut(s)	218, 268, 295, 311, 337, 520, 653, 675
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	3 cut(s)	322, 389, 581
HpyCH4III	ACNGT	2 cut(s)	548, 635
HpyCH4IV	ACGT	3 cut(s)	279, 342, 555
HpyCH4V	TGCA	2 cut(s)	19, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 259
HpyF3I	CTNAG	4 cut(s)	167, 540, 619, 659
HpySE526I	ACGT	3 cut(s)	279, 342, 555
Hsp92II	CATG	2 cut(s)	52, 490
HspAI	GCGC	1 cut(s)	594
Kpn2I	TCCGGA	2 cut(s)	336, 674
LmnI	GCTCC	3 cut(s)	28, 154, 181
Lsp1109I	GCAGC	1 cut(s)	110
MaeII	ACGT	3 cut(s)	279, 342, 555
MaeIII	GTNAC	4 cut(s)	474, 563, 602, 626
MboII	GAAGA	2 cut(s)	518, 583
MflI	RGATCY	4 cut(s)	234, 356, 377, 404
MhlI	GDGCHC	3 cut(s)	151, 546, 660
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	517
MroI	TCCGGA	2 cut(s)	336, 674
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	204
MspI	CCGG	4 cut(s)	102, 142, 337, 675
MspR9I	CCNGG	3 cut(s)	103, 179, 512
MvaI	CCWGG	2 cut(s)	179, 512
MwoI	GCNNNNNNNGC	2 cut(s)	127, 259
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	52, 490
NlaIV	GGNNCC	5 cut(s)	6, 150, 293, 358, 379
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 552
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	171, 226, 434
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	100
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	660
Psp1406I	AACGTT	2 cut(s)	279, 342
Psp6I	CCWGG	2 cut(s)	177, 510
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	177, 510
PspN4I	GGNNCC	5 cut(s)	6, 150, 293, 358, 379
PsuI	RGATCY	4 cut(s)	234, 356, 377, 404
PvuI	CGATCG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	103, 179, 512
SduI	GDGCHC	3 cut(s)	151, 546, 660
SmlI	CTYRAG	2 cut(s)	302, 653
SmoI	CTYRAG	2 cut(s)	302, 653
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	101, 177, 510
StyI	CCWWGG	2 cut(s)	469, 559
TaaI	ACNGT	2 cut(s)	548, 635
TaiI	ACGT	3 cut(s)	282, 345, 558
TaqI	TCGA	7 cut(s)	267, 363, 411, 455, 459, 519, 684
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	3 cut(s)	171, 226, 434
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	445, 640
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	445, 640
XapI	RAATTY	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.