Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004976.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

121012 .. 122400

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgggtgtcatttcagaagctgataagaagaaggcatctgggtatgagattgttggctttgaggtttacccttgtagtgttaaatacgaccctgataccatgagtaaaaatgagatgtataaacttatctcaactgtgaagtgtccctcagaccttgacaagtctcaaatcataagggagcaagagagagtgtcattcacctatgaggttgaatttgtgaaaagtgatataagatggccatcaaggtgggatgcctatttgaagatggagggtgcccgtgtgcactggttctctatcctcaattcgttaatggtgatattcttccttgctggtatcgtttttgtcatattcctaaggaccgtgaggagggatttaacaagatatgaagaactggacaaagaagctcaagctcagatgaatgaggagctttctgggtggaagcttgttgtgggagatgtgttcagagagccagatcacccaaagcttctttgcgtgatggttggtgatggggttcagattacaggaatgtcagttgttactatcgtttttgcagcatttggcttcatgtcacctgcttcacgaggaatgctactgacaggcatgatcattctatatcttttccttggaattattgctggttatgttgctgtccgaatgtggagtaccataaagggaacttcagaagggtggagatccgtttcctggtttacagcatgcttctttcctggaatcgtctttgttattcttacaattctgaatttcatcctatggggaagcaatagtactggtgctattcctatttccttgtattttgttctcttttccctctggttctgcatttcagtgccactcactcttcttggaggattcttggggacacgagcggaggctattcaatttcctgttcgaaccaaccagattcctagagaaattcctgcacgcaaatatccatcatggcttcttgttctcggtgccgggacacttccctttggaactctcttcattgaactattcttcatcctttcaagcatctggctaggaaggttctattatgtctttggtttcctgcttatagtgcttctattgctggtggttgtttgcgctgaagtttcagtggttctcacatacatgcatctctgtgtggaggattggcggtggtggtggaaggctttctttgcttcggggtcagttgccctttatgtgttcctgtactccatcaactacctggtatttgatctgcagagtttgagtggccctgtgtcggctaccctttaccttggttattcattaatcatggcaactgcaatcatgttgtcaactggcaccatcggatttctcacgtctttctactttgttcattacctattttcatctgtcaagatcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016021 GO:0030054 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055044 GO:0060341 GO:0065007 GO:0070201 GO:0070861 GO:0070863 GO:0090087 GO:0090316 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

462

Amino Acids

52.46

Weight (kDa)

6.9

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	9 - 415	5.9e-150	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	3 cut(s)	272, 971, 1322
AccBSI	CCGCTC	1 cut(s)	884
AciI	CCGC	2 cut(s)	884, 1153
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	3 cut(s)	212, 757, 930
AcuI	CTGAAG	2 cut(s)	663, 1125
AfaI	GTAC	3 cut(s)	664, 784, 1211
AfiI	CCNNNNNNNGG	3 cut(s)	366, 702, 1261
AgsI	TTSAA	5 cut(s)	212, 262, 896, 1007, 1026
AjiI	CACGTC	1 cut(s)	1341
AjnI	CCWGG	3 cut(s)	701, 724, 1224
AluBI	AGCT	6 cut(s)	20, 404, 410, 427, 442, 484
AluI	AGCT	6 cut(s)	20, 404, 410, 427, 442, 484
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	687
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	236, 1252
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	3 cut(s)	212, 757, 930
AseI	ATTAAT	1 cut(s)	1289
Asp700I	GAANNNNTTC	1 cut(s)	1169
AspLEI	GCGC	1 cut(s)	1103
AspS9I	GGNCC	2 cut(s)	357, 1253
AsuC2I	CCSGG	1 cut(s)	976
AsuHPI	GGTGA	5 cut(s)	190, 325, 467, 515, 561
AsuII	TTCGAA	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	277, 285
BalI	TGGCCA	1 cut(s)	238
BanI	GGYRCC	3 cut(s)	272, 971, 1322
BarI	GAAGNNNNNNTAC	2 cut(s)	766, 798
BauI	CACGAG	2 cut(s)	579, 879
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	8 cut(s)	228, 247, 259, 490, 500, 958, 1223, 1334
BciT130I	CCWGG	3 cut(s)	703, 726, 1226
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	976
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	924, 1037
BfmI	CTRYAG	1 cut(s)	1238
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	4 cut(s)	703, 726, 976, 1226
Bme18I	GGWCC	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	1341
BmgT120I	GGNCC	2 cut(s)	357, 1253
BmiI	GGNNCC	3 cut(s)	274, 973, 1324
BmrFI	CCNGG	4 cut(s)	703, 726, 976, 1226
BmsI	GCATC	4 cut(s)	44, 241, 1038, 1141
Bpu14I	TTCGAA	1 cut(s)	907
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	976
Bsa29I	ATCGAT	1 cut(s)	1383
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	622, 1276
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 702, 1261
Bse1I	ACTGG	4 cut(s)	290, 396, 790, 1324
Bse21I	CCTNAGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	703, 726, 1226
BseCI	ATCGAT	1 cut(s)	1383
BseDI	CCNNGG	2 cut(s)	622, 1276
BseGI	GGATG	3 cut(s)	256, 762, 1017
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	366, 702, 1261
BseMII	CTCAG	2 cut(s)	162, 425
BseNI	ACTGG	4 cut(s)	290, 396, 790, 1324
BseRI	GAGGAG	2 cut(s)	379, 437
BseSI	GKGCMC	2 cut(s)	277, 285
BseXI	GCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	2 cut(s)	238, 1254
BshNI	GGYRCC	3 cut(s)	272, 971, 1322
BshVI	ATCGAT	1 cut(s)	1383
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	975
BslFI	GGGAC	3 cut(s)	129, 889, 991
BslI	CCNNNNNNNGG	3 cut(s)	366, 702, 1261
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	3 cut(s)	129, 889, 991
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	238, 1254
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	2 cut(s)	277, 285
Bsp143I	GATC	5 cut(s)	472, 603, 692, 1234, 1380
BspACI	CCGC	2 cut(s)	884, 1153
BspANI	GGCC	2 cut(s)	238, 1254
BspCNI	CTCAG	2 cut(s)	161, 424
BspDI	ATCGAT	1 cut(s)	1383
BspLI	GGNNCC	3 cut(s)	274, 973, 1324
BspMAI	CTGCAG	1 cut(s)	1242
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	687
BspT104I	TTCGAA	1 cut(s)	907
BspT107I	GGYRCC	3 cut(s)	272, 971, 1322
BsrBI	CCGCTC	1 cut(s)	884
BsrI	ACTGG	4 cut(s)	290, 396, 790, 1324
BssECI	CCNNGG	2 cut(s)	622, 1276
BssMI	GATC	5 cut(s)	472, 603, 692, 1234, 1380
BssSI	CACGAG	2 cut(s)	579, 879
BssT1I	CCWWGG	2 cut(s)	622, 1276
Bst2BI	CACGAG	2 cut(s)	579, 879
Bst2UI	CCWGG	3 cut(s)	703, 726, 1226
Bst4CI	ACNGT	2 cut(s)	136, 361
Bst6I	CTCTTC	2 cut(s)	861, 1004
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	2 cut(s)	715, 940
BstDEI	CTNAG	3 cut(s)	148, 353, 411
BstF5I	GGATG	3 cut(s)	256, 762, 1017
BstHHI	GCGC	1 cut(s)	1103
BstKTI	GATC	5 cut(s)	475, 606, 695, 1237, 1383
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	5 cut(s)	472, 603, 692, 1234, 1380
BstMWI	GCNNNNNNNGC	3 cut(s)	1075, 1084, 1175
BstNI	CCWGG	3 cut(s)	703, 726, 1226
BstNSI	RCATGY	2 cut(s)	717, 1132
BstSCI	CCNGG	4 cut(s)	701, 724, 974, 1224
BstSFI	CTRYAG	1 cut(s)	1238
BstSLI	GKGCMC	2 cut(s)	277, 285
BstV1I	GCAGC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	692
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	692
Bsu15I	ATCGAT	1 cut(s)	1383
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	238, 1254
BsuTUI	ATCGAT	1 cut(s)	1383
BtrI	CACGTC	1 cut(s)	1341
BtsCI	GGATG	3 cut(s)	256, 762, 1017
BtsIMutI	CAGTG	3 cut(s)	283, 849, 1119
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	715, 940
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	1103
Cfr13I	GGNCC	2 cut(s)	357, 1253
ClaI	ATCGAT	1 cut(s)	1383
CsiI	ACCWGGT	1 cut(s)	1224
Csp6I	GTAC	3 cut(s)	663, 783, 1210
CviAII	CATG	8 cut(s)	100, 565, 601, 714, 954, 1129, 1294, 1309
CviQI	GTAC	3 cut(s)	663, 783, 1210
DdeI	CTNAG	3 cut(s)	148, 353, 411
DpnI	GATC	5 cut(s)	474, 605, 694, 1236, 1382
DpnII	GATC	5 cut(s)	472, 603, 692, 1234, 1380
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	861, 1004
EarI	CTCTTC	2 cut(s)	861, 1004
Eco130I	CCWWGG	2 cut(s)	622, 1276
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	663, 1125
Eco81I	CCTNAGG	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	701, 724, 1224
EcoT14I	CCWWGG	2 cut(s)	622, 1276
EcoT22I	ATGCAT	1 cut(s)	1134
ErhI	CCWWGG	2 cut(s)	622, 1276
FaeI	CATG	8 cut(s)	103, 568, 604, 717, 957, 1132, 1297, 1312
FalI	AAGNNNNNCTT	2 cut(s)	1157, 1189
FaqI	GGGAC	3 cut(s)	129, 889, 991
FatI	CATG	8 cut(s)	99, 564, 600, 713, 953, 1128, 1293, 1308
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	263, 749, 1004
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	924, 1037
GlaI	GCGC	1 cut(s)	1102
GluI	GCNGC	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	238, 1254
HapII	CCGG	1 cut(s)	975
HhaI	GCGC	1 cut(s)	1103
Hin1II	CATG	8 cut(s)	103, 568, 604, 717, 957, 1132, 1297, 1312
Hin6I	GCGC	1 cut(s)	1101
HinP1I	GCGC	1 cut(s)	1101
HincII	GTYRAC	1 cut(s)	1317
HindII	GTYRAC	1 cut(s)	1317
HindIII	AAGCTT	2 cut(s)	440, 482
HinfI	GANTC	3 cut(s)	729, 867, 919
HpaII	CCGG	1 cut(s)	975
HphI	GGTGA	5 cut(s)	190, 325, 467, 515, 561
Hpy166II	GTNNAC	4 cut(s)	67, 283, 708, 1317
Hpy188I	TCNGA	9 cut(s)	16, 151, 414, 464, 516, 653, 682, 756, 1331
Hpy188III	TCNNGA	2 cut(s)	579, 1378
Hpy8I	GTNNAC	4 cut(s)	67, 283, 708, 1317
HpyAV	CCTTC	4 cut(s)	25, 677, 1035, 1159
HpyCH4III	ACNGT	2 cut(s)	136, 361
HpyCH4IV	ACGT	1 cut(s)	1340
HpyCH4V	TGCA	7 cut(s)	283, 551, 837, 938, 1132, 1240, 1304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1075, 1084, 1175
HpyF3I	CTNAG	3 cut(s)	148, 353, 411
HpySE526I	ACGT	1 cut(s)	1340
Hsp92II	CATG	8 cut(s)	103, 568, 604, 717, 957, 1132, 1297, 1312
HspAI	GCGC	1 cut(s)	1101
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	472, 603, 692, 1234, 1380
LmnI	GCTCC	2 cut(s)	178, 424
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	4 cut(s)	44, 241, 1038, 1141
MabI	ACCWGGT	1 cut(s)	1224
MaeI	CTAG	2 cut(s)	924, 1037
MaeII	ACGT	1 cut(s)	1340
MaeIII	GTNAC	2 cut(s)	535, 567
MalI	GATC	5 cut(s)	474, 605, 694, 1236, 1382
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	5 cut(s)	472, 603, 692, 1234, 1380
MboII	GAAGA	7 cut(s)	40, 274, 313, 398, 848, 991, 1006
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	277, 285
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	7 cut(s)	212, 301, 627, 750, 757, 896, 930
MluNI	TGGCCA	1 cut(s)	238
Mox20I	TGGCCA	1 cut(s)	238
Mph1103I	ATGCAT	1 cut(s)	1134
MroXI	GAANNNNTTC	1 cut(s)	1169
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	4 cut(s)	81, 308, 374, 1289
MslI	CAYNNNNRTG	4 cut(s)	244, 842, 1127, 1137
Msp20I	TGGCCA	1 cut(s)	238
MspI	CCGG	1 cut(s)	975
MspR9I	CCNGG	4 cut(s)	703, 726, 976, 1226
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	3 cut(s)	703, 726, 1226
MwoI	GCNNNNNNNGC	3 cut(s)	1075, 1084, 1175
NciI	CCSGG	1 cut(s)	976
NdeII	GATC	5 cut(s)	472, 603, 692, 1234, 1380
NlaIII	CATG	8 cut(s)	103, 568, 604, 717, 957, 1132, 1297, 1312
NlaIV	GGNNCC	3 cut(s)	274, 973, 1324
NmuCI	GTSAC	1 cut(s)	567
NsiI	ATGCAT	1 cut(s)	1134
NspI	RCATGY	2 cut(s)	717, 1132
NspV	TTCGAA	1 cut(s)	907
PaeI	GCATGC	1 cut(s)	717
PaqCI	CACCTGC	1 cut(s)	580
PctI	GAATGC	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	1169
PfeI	GAWTC	3 cut(s)	729, 867, 919
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	1 cut(s)	553
PshBI	ATTAAT	1 cut(s)	1289
Psp6I	CCWGG	3 cut(s)	701, 724, 1224
PspGI	CCWGG	3 cut(s)	701, 724, 1224
PspN4I	GGNNCC	3 cut(s)	274, 973, 1324
PspPI	GGNCC	2 cut(s)	357, 1253
PstI	CTGCAG	1 cut(s)	1242
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	692
RsaI	GTAC	3 cut(s)	664, 784, 1211
RsaNI	GTAC	3 cut(s)	663, 783, 1210
RseI	CAYNNNNRTG	4 cut(s)	244, 842, 1127, 1137
SaqAI	TTAA	4 cut(s)	81, 308, 374, 1289
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	5 cut(s)	472, 603, 692, 1234, 1380
Sau96I	GGNCC	2 cut(s)	357, 1253
ScaI	AGTACT	1 cut(s)	784
ScrFI	CCNGG	4 cut(s)	703, 726, 976, 1226
SduI	GDGCHC	2 cut(s)	277, 285
SexAI	ACCWGGT	1 cut(s)	1224
SfaNI	GCATC	4 cut(s)	44, 241, 1038, 1141
SfcI	CTRYAG	1 cut(s)	1238
SfuI	TTCGAA	1 cut(s)	907
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	4 cut(s)	244, 842, 1127, 1137
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	7 cut(s)	212, 301, 627, 750, 757, 896, 930
SsiI	CCGC	2 cut(s)	884, 1153
SspMI	CTAG	2 cut(s)	924, 1037
StyD4I	CCNGG	4 cut(s)	701, 724, 974, 1224
StyI	CCWWGG	2 cut(s)	622, 1276
TaaI	ACNGT	2 cut(s)	136, 361
TaiI	ACGT	1 cut(s)	1343
TaqI	TCGA	2 cut(s)	907, 1383
TasI	AATT	7 cut(s)	212, 301, 627, 750, 757, 896, 930
TatI	WGTACW	2 cut(s)	782, 1209
TfiI	GAWTC	3 cut(s)	729, 867, 919
Tru1I	TTAA	4 cut(s)	81, 308, 374, 1289
Tru9I	TTAA	4 cut(s)	81, 308, 374, 1289
TscAI	CASTG	3 cut(s)	290, 849, 1119
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	567
TspDTI	ATGAA	9 cut(s)	399, 431, 553, 751, 991, 1006, 1275, 1346, 1359
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	3 cut(s)	290, 849, 1119
VneI	GTGCAC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	1289
XapI	RAATTY	3 cut(s)	212, 757, 930
XceI	RCATGY	2 cut(s)	717, 1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1222
XmnI	GAANNNNTTC	1 cut(s)	1169
XspI	CTAG	2 cut(s)	924, 1037
ZrmI	AGTACT	1 cut(s)	784
Zsp2I	ATGCAT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.