Rmu_sc0004988.1_g000007

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004988.1
N/A
Physical Location & Seq
Reverse (-)
11260 .. 13894
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
atgagagcaacttttaggaggtattttggaacagttgatgatatgaatcagttgctgttagtagcccttgtcttggatcctaggttcaagttgaaaaacattagtcacatatgtttaactcacctccagtttgatgctgccgaatcaaaggccaaggccaatgatatgaaggagctgttggtatgcttaattgatctctatagatcatcaaccaatgcctcttcaaagagtaaaagttctaggagcagcactggaacaagctgcgtcgtttctagcagcacaaaagcaacaaccacatcttccaattccaagtccaaggccaaggagaagagcaagaaaatgtctgggaaaatggctgagatgttagaaggttggcaaagagctctagctgaatcggacgaagttgttgttgagagtgaagttgataggtatctacttgatccaatggagaatcccaaagatgaagattgcattgatttgtttgcgaaactggatcaaaaaagagatcaatctgacattaagtattatccaagcctaaaagagcttgagttttatgaaaaaatggaaagagatgtagcaaagggaaaagaagtagccgtccaaagtgaagatgaagcaactgccgaagctagaagatcaaagtctccaaaagtctccaaaagagctgtagctgcaactccttcaacaagtgccgctgctggaacctcaaaatctgcaaaagcagcaacacaagtgctgctgccaccaagaaaagctaaagagtcgccctccaagataatcaagaaaccaaggccgaaggtagatttagattttggttccccatttatctctacctttctcttagatttagggttcttagggttctgttctcttagattgttcaccttcctcttcaacgatggaggagatagagtgtcgcagatccactttctctctctcttcctcgccttcaaactagggtcaattgaagagaggcagaagacgaaggtgtctgagacagcggaggcaaacgtactgtgttatgccgacgaggcggcgcttgctgagcatgtgacaaaaaggtccacggagctatgttcatcgaatagtgcctctcatcatcaccaacgattctctggtcgaagagggaaggagtttatactagagatgttcatattatcatctctgcatctctgttgtacttatggagccactcagaatctggagatcactgtcaacaatgtgagttttggcttttccaatttaaggggtgaattgggaaatattttgattgatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

426

Amino Acids

47.28

Weight (kDa)

8.78

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 988, 1060
AciI CCGC 3 cut(s) 693, 1001, 1034
AclWI GGATC 5 cut(s) 71, 84, 434, 501, 916
AfaI GTAC 2 cut(s) 1014, 1180
AfiI CCNNNNNNNGG 2 cut(s) 73, 1245
AgsI TTSAA 7 cut(s) 88, 94, 225, 684, 895, 952, 968
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 3 cut(s) 648, 658, 989
AlwI GGATC 5 cut(s) 71, 84, 434, 501, 916
AlwNI CAGNNNCTG 2 cut(s) 55, 1201
AoxI GGCC 4 cut(s) 150, 156, 318, 791
ApeKI GCWGC 9 cut(s) 137, 246, 261, 276, 671, 695, 722, 736, 739
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 1 cut(s) 1062
AsuHPI GGTGA 4 cut(s) 113, 874, 1094, 1262
AvaII GGWCC 1 cut(s) 1062
AvrII CCTAGG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 9 cut(s) 124, 248, 258, 288, 658, 682, 723, 726, 734
BccI CCATC 1 cut(s) 893
BceAI ACGGC 1 cut(s) 581
BcoDI GTCTC 3 cut(s) 648, 658, 989
BfaI CTAG 7 cut(s) 81, 240, 273, 386, 630, 956, 1142
BfmI CTRYAG 2 cut(s) 199, 666
BfoI RGCGCY 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 1031
BlnI CCTAGG 1 cut(s) 80
BlpI GCTNAGC 1 cut(s) 1044
Bme18I GGWCC 1 cut(s) 1062
BmgT120I GGNCC 1 cut(s) 1062
BmiI GGNNCC 4 cut(s) 78, 703, 817, 1189
BmsI GCATC 2 cut(s) 124, 1177
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 752, 784
BpmI CTGGAG 2 cut(s) 110, 1223
Bpu1102I GCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 1 cut(s) 566
BsaBI GATNNNNATC 2 cut(s) 45, 429
BsaJI CCNNGG 6 cut(s) 80, 153, 315, 321, 788, 1065
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 1245
Bse1I ACTGG 3 cut(s) 127, 256, 495
Bse8I GATNNNNATC 2 cut(s) 45, 429
BseDI CCNNGG 6 cut(s) 80, 153, 315, 321, 788, 1065
BseJI GATNNNNATC 2 cut(s) 45, 429
BseLI CCNNNNNNNGG 2 cut(s) 73, 1245
BseMII CTCAG 4 cut(s) 348, 984, 1035, 1208
BseNI ACTGG 3 cut(s) 127, 256, 495
BseRI GAGGAG 1 cut(s) 918
BseXI GCAGC 9 cut(s) 124, 248, 258, 288, 658, 682, 723, 726, 734
BshFI GGCC 4 cut(s) 152, 158, 320, 793
BsiHKAI GWGCWC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 73, 1245
BsmAI GTCTC 3 cut(s) 648, 658, 989
BsnI GGCC 4 cut(s) 152, 158, 320, 793
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
Bsp1720I GCTNAGC 1 cut(s) 1044
BspACI CCGC 3 cut(s) 693, 1001, 1034
BspANI GGCC 4 cut(s) 152, 158, 320, 793
BspCNI CTCAG 4 cut(s) 349, 985, 1036, 1207
BspLI GGNNCC 4 cut(s) 78, 703, 817, 1189
BspPI GGATC 5 cut(s) 71, 84, 434, 501, 916
BspQI GCTCTTC 1 cut(s) 323
BsrI ACTGG 3 cut(s) 127, 256, 495
BssECI CCNNGG 6 cut(s) 80, 153, 315, 321, 788, 1065
BssMI GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
BssT1I CCWWGG 5 cut(s) 80, 153, 315, 321, 788
Bst4CI ACNGT 3 cut(s) 34, 1017, 1213
Bst6I CTCTTC 6 cut(s) 226, 323, 896, 944, 963, 1117
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 7 cut(s) 357, 841, 856, 872, 993, 1044, 1194
BstDSI CCRYGG 1 cut(s) 1065
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 9 cut(s) 79, 196, 206, 442, 496, 508, 638, 924, 1209
BstMAI GTCTC 3 cut(s) 648, 658, 989
BstMBI GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
BstMWI GCNNNNNNNGC 5 cut(s) 671, 722, 1031, 1040, 1045
BstNSI RCATGY 1 cut(s) 1052
BstSFI CTRYAG 2 cut(s) 199, 666
BstV1I GCAGC 9 cut(s) 124, 248, 258, 288, 658, 682, 723, 726, 734
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 2 cut(s) 76, 921
BstYI RGATCY 2 cut(s) 76, 921
BsuRI GGCC 4 cut(s) 152, 158, 320, 793
BtgI CCRYGG 1 cut(s) 1065
BtsIMutI CAGTG 2 cut(s) 249, 1209
Cac8I GCNNGC 1 cut(s) 1041
CaiI CAGNNNCTG 2 cut(s) 55, 1201
CfoI GCGC 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 1062
CseI GACGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 1013, 1179
CviAII CATG 1 cut(s) 1049
CviQI GTAC 2 cut(s) 1013, 1179
DdeI CTNAG 7 cut(s) 357, 841, 856, 872, 993, 1044, 1194
DpnI GATC 9 cut(s) 78, 195, 205, 441, 495, 507, 637, 923, 1208
DpnII GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
DrdI GACNNNNNNGTC 2 cut(s) 988, 1060
DseDI GACNNNNNNGTC 2 cut(s) 988, 1060
Eam1104I CTCTTC 6 cut(s) 226, 323, 896, 944, 963, 1117
EarI CTCTTC 6 cut(s) 226, 323, 896, 944, 963, 1117
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 5 cut(s) 80, 153, 315, 321, 788
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 1062
Eco53kI GAGCTC 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 383
EcoT14I CCWWGG 5 cut(s) 80, 153, 315, 321, 788
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 5 cut(s) 80, 153, 315, 321, 788
FaeI CATG 1 cut(s) 1052
FatI CATG 1 cut(s) 1048
FauNDI CATATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 385
FspBI CTAG 7 cut(s) 81, 240, 273, 386, 630, 956, 1142
GlaI GCGC 1 cut(s) 1038
GsuI CTGGAG 2 cut(s) 110, 1223
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 152, 158, 320, 793
HgaI GACGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 1039
Hin1II CATG 1 cut(s) 1052
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 7 cut(s) 46, 143, 392, 451, 761, 1110, 1198
HphI GGTGA 4 cut(s) 113, 874, 1094, 1262
Hpy166II GTNNAC 3 cut(s) 882, 1065, 1216
Hpy188I TCNGA 4 cut(s) 397, 514, 994, 1197
Hpy188III TCNNGA 2 cut(s) 781, 1202
Hpy8I GTNNAC 3 cut(s) 882, 1065, 1216
Hpy99I CGWCG 2 cut(s) 269, 1031
HpyAV CCTTC 8 cut(s) 163, 362, 690, 790, 895, 958, 979, 1123
HpyCH4III ACNGT 3 cut(s) 34, 1017, 1213
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 4 cut(s) 471, 674, 716, 1168
HpyF10VI GCNNNNNNNGC 5 cut(s) 671, 722, 1031, 1040, 1045
HpyF3I CTNAG 7 cut(s) 357, 841, 856, 872, 993, 1044, 1194
HpySE526I ACGT 1 cut(s) 1011
Hsp92II CATG 1 cut(s) 1052
HspAI GCGC 1 cut(s) 1037
Kzo9I GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 4 cut(s) 172, 243, 1069, 1187
LpnPI CCDG 7 cut(s) 140, 237, 330, 476, 684, 1101, 1187
Lsp1109I GCAGC 9 cut(s) 124, 248, 258, 288, 658, 682, 723, 726, 734
LweI GCATC 2 cut(s) 124, 1177
MaeI CTAG 7 cut(s) 81, 240, 273, 386, 630, 956, 1142
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 2 cut(s) 104, 1051
MalI GATC 9 cut(s) 78, 195, 205, 441, 495, 507, 637, 923, 1208
MboI GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 2 cut(s) 76, 921
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 5 cut(s) 189, 304, 963, 1240, 1253
MlyI GAGTC 1 cut(s) 770
MseI TTAA 4 cut(s) 116, 188, 519, 1244
MspA1I CMGCKG 2 cut(s) 695, 1001
MunI CAATTG 1 cut(s) 963
MwoI GCNNNNNNNGC 5 cut(s) 671, 722, 1031, 1040, 1045
NdeI CATATG 1 cut(s) 110
NdeII GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
NlaIII CATG 1 cut(s) 1052
NlaIV GGNNCC 4 cut(s) 78, 703, 817, 1189
NmuCI GTSAC 2 cut(s) 104, 1051
NspI RCATGY 1 cut(s) 1052
PciSI GCTCTTC 1 cut(s) 323
PfeI GAWTC 6 cut(s) 46, 143, 392, 451, 1110, 1198
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 385
PspN4I GGNNCC 4 cut(s) 78, 703, 817, 1189
PspPI GGNCC 1 cut(s) 1062
PstNI CAGNNNCTG 2 cut(s) 55, 1201
PsuI RGATCY 2 cut(s) 76, 921
RsaI GTAC 2 cut(s) 1014, 1180
RsaNI GTAC 2 cut(s) 1013, 1179
SacI GAGCTC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 4 cut(s) 116, 188, 519, 1244
Sau3AI GATC 9 cut(s) 76, 193, 203, 439, 493, 505, 635, 921, 1206
Sau96I GGNCC 1 cut(s) 1062
SchI GAGTC 1 cut(s) 770
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 2 cut(s) 124, 1177
SfcI CTRYAG 2 cut(s) 199, 666
SinI GGWCC 1 cut(s) 1062
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 5 cut(s) 189, 304, 963, 1240, 1253
SsiI CCGC 3 cut(s) 693, 1001, 1034
SspI AATATT 1 cut(s) 1264
SspMI CTAG 7 cut(s) 81, 240, 273, 386, 630, 956, 1142
SstI GAGCTC 1 cut(s) 385
StyI CCWWGG 5 cut(s) 80, 153, 315, 321, 788
TaaI ACNGT 3 cut(s) 34, 1017, 1213
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 2 cut(s) 1082, 1120
TasI AATT 5 cut(s) 189, 304, 963, 1240, 1253
TatI WGTACW 1 cut(s) 1178
TauI GCSGC 2 cut(s) 695, 1037
TfiI GAWTC 6 cut(s) 46, 143, 392, 451, 1110, 1198
Tru1I TTAA 4 cut(s) 116, 188, 519, 1244
Tru9I TTAA 4 cut(s) 116, 188, 519, 1244
TscAI CASTG 2 cut(s) 256, 1216
TseFI GTSAC 2 cut(s) 104, 1051
TseI GCWGC 9 cut(s) 137, 246, 261, 276, 671, 695, 722, 736, 739
Tsp45I GTSAC 2 cut(s) 104, 1051
TspDTI ATGAA 7 cut(s) 59, 182, 477, 570, 627, 1068, 1141
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 2 cut(s) 256, 1216
VpaK11BI GGWCC 1 cut(s) 1062
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 2 cut(s) 1112, 1198
XmaJI CCTAGG 1 cut(s) 80
XspI CTAG 7 cut(s) 81, 240, 273, 386, 630, 956, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.