Rmu_sc0004999.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004999.1
N/A
Physical Location & Seq
Forward (+)
4166 .. 4691
526 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
atgggtggtcatggaggtctgaatatattgcctcagaagcggtggaatgtgtacaactttgataatagagagaaggttcggctggatgaagaagccgccgccaaagaagagcagctcaagcgggaacaggccaggcggagagacaccgagtgtcgaattgagcagctccgggagcgagaaacagagggagctactgaaacagagcgaagagggttgaagagcttggagaagaggcttggggatgaggcccttctgagagcgattgagattgacgaagccatggagctatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

97

Amino Acids

11.4

Weight (kDa)

5.36

Isoelectric Point (pI)

90.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 40, 96, 99, 121, 136
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 5 cut(s) 115, 166, 191, 222, 286
AluI AGCT 5 cut(s) 115, 166, 191, 222, 286
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 2 cut(s) 129, 246
ApeKI GCWGC 2 cut(s) 112, 163
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 124, 175
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 4 cut(s) 96, 99, 113, 164
BlsI GCNGC 4 cut(s) 97, 100, 114, 165
Bme1390I CCNGG 2 cut(s) 133, 170
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 133, 170
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 91, 247
BseMII CTCAG 2 cut(s) 47, 245
BseXI GCAGC 2 cut(s) 124, 175
BshFI GGCC 2 cut(s) 131, 248
BsiSI CCGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 2 cut(s) 131, 248
Bsp1407I TGTACA 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 5 cut(s) 40, 96, 99, 121, 136
BspANI GGCC 2 cut(s) 131, 248
BspCNI CTCAG 2 cut(s) 46, 246
BspQI GCTCTTC 2 cut(s) 102, 212
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 4 cut(s) 102, 202, 212, 224
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 33, 254
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 91, 247
BstMAI GTCTC 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 37, 118, 172
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 131, 168
BstV1I GCAGC 2 cut(s) 124, 175
BsuRI GGCC 2 cut(s) 131, 248
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 91, 247
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 11, 280
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 33, 254
DraIII CACNNNGTG 1 cut(s) 150
Eam1104I CTCTTC 4 cut(s) 102, 202, 212, 224
EarI CTCTTC 4 cut(s) 102, 202, 212, 224
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 14, 283
FaiI YATR 4 cut(s) 12, 26, 281, 289
FatI CATG 2 cut(s) 10, 279
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 96, 99, 113, 164
FokI GGATG 2 cut(s) 98, 254
Fsp4HI GCNGC 4 cut(s) 96, 99, 113, 164
GluI GCNGC 4 cut(s) 96, 99, 113, 164
HaeIII GGCC 2 cut(s) 131, 248
HapII CCGG 1 cut(s) 169
Hin1II CATG 2 cut(s) 14, 283
HpaII CCGG 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 21, 36, 255
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 67, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 118, 172
HpyF3I CTNAG 2 cut(s) 33, 254
Hsp92II CATG 2 cut(s) 14, 283
LguI GCTCTTC 2 cut(s) 102, 212
LmnI GCTCC 4 cut(s) 171, 172, 188, 283
LpnPI CCDG 5 cut(s) 68, 113, 118, 145, 182
Lsp1109I GCAGC 2 cut(s) 124, 175
MboII GAAGA 5 cut(s) 101, 119, 219, 229, 241
MluCI AATT 1 cut(s) 156
MnlI CCTC 6 cut(s) 8, 42, 178, 203, 225, 238
MseI TTAA 1 cut(s) 292
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 133, 170
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 3 cut(s) 37, 118, 172
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 279
NlaIII CATG 2 cut(s) 14, 283
PciSI GCTCTTC 2 cut(s) 102, 212
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 4 cut(s) 97, 100, 114, 165
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SapI GCTCTTC 2 cut(s) 102, 212
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 4 cut(s) 96, 99, 113, 164
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 133, 170
SetI ASST 7 cut(s) 19, 78, 117, 168, 193, 224, 288
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 156
SsiI CCGC 5 cut(s) 40, 96, 99, 121, 136
StyD4I CCNGG 2 cut(s) 131, 168
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 1 cut(s) 154
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 98, 101
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 2 cut(s) 112, 163
TspDTI ATGAA 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.