Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004999.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22358 .. 27979

Gene Structure 5622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgagcaccggcgagcttctcagcatcgagcctctcgagctcaagttccccttcgaattgaagaagcagatctcttgctcgcttcagctctcgaataagaccgatagctatgtcgctttcaaggtcaaaactacgaatccaaagaagtattgtgttcgtccaaacacgggaattgttttgccgcgatccacgtgtgatgttatagttacaatgcaggcgcaaaaagaggctcctccagacatgcaatgcaaggataagtttctcctgcagagtgtaaaaaccaatgacggtgcaactccgaaggatattactccagaagtgttcaataaagacgcaggacatgtggttgaggagtgcaaattgagagtggtatatgtttctccacctcagcccccttctccggtcccagaagggtcagaggaagggtcttcaccaagagcttctgttacagagaatggaaatcttaatggttccgagttttccaatgctgcaaaaggactttcagagcagattgaagttccgaagagatctgcagaggcgcaaaaagaggctcctccagacatgcaatgcaaggataagtttctcctgcagagtgtaaaaaccaatgacggtgcaactccgaaggatattactccagaagtgttcaataaagacgcaggacatgtggttgaggagtgcaaattgagagtggtatatgtttctccacctcagcccccttctccggtcccagaagggtcagaggaagggtcttcaccaagagcttctgttacagagaatggaaatcttaatggttccgagttttccaatgtgagctgcaaaagactttcagagcagattgaagttccgaagagatctgcagaggaaaatgcacttattaagaaattgtcagaggaaaagtcaaatgcgcttcaaacaaataagaggcttcgtcaggagctggaactcttaaggaatcaagggggcaaaagccatggtggtgtttcaatcattgtcgtcattattattggcctcattggcttacttttgggttatctcatgaagaagtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

349

Amino Acids

38.03

Weight (kDa)

6.86

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	7.8e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	167, 400, 721
AflII	CTTAAG	1 cut(s)	946
AflIII	ACRYGT	3 cut(s)	191, 340, 661
AgsI	TTSAA	8 cut(s)	61, 121, 325, 515, 646, 839, 911, 984
AluBI	AGCT	8 cut(s)	16, 40, 88, 108, 440, 761, 813, 937
AluI	AGCT	8 cut(s)	16, 40, 88, 108, 440, 761, 813, 937
Alw21I	GWGCWC	2 cut(s)	8, 42
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	1006
ApeKI	GCWGC	2 cut(s)	488, 813
AspLEI	GCGC	3 cut(s)	220, 541, 907
AspS9I	GGNCC	2 cut(s)	403, 724
AsuHPI	GGTGA	2 cut(s)	423, 744
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	403, 724
BanII	GRGCYC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	420, 741
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvCI	CCTCAGC	2 cut(s)	387, 708
BbvI	GCAGC	2 cut(s)	475, 800
BfmI	CTRYAG	4 cut(s)	266, 531, 587, 855
BfrI	CTTAAG	1 cut(s)	946
BglI	GCCNNNNNGGC	1 cut(s)	1014
BglII	AGATCT	3 cut(s)	69, 527, 851
BisI	GCNGC	3 cut(s)	182, 489, 814
BlsI	GCNGC	3 cut(s)	183, 490, 815
Bme18I	GGWCC	2 cut(s)	403, 724
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	403, 724
BmiI	GGNNCC	6 cut(s)	231, 405, 472, 552, 726, 793
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	2 cut(s)	420, 741
BpmI	CTGGAG	4 cut(s)	219, 297, 540, 618
Bpu10I	CCTNAGC	2 cut(s)	387, 708
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	2 cut(s)	400, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 400, 721
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	251, 572
BseDI	CCNNGG	1 cut(s)	970
BseLI	CCNNNNNNNGG	3 cut(s)	167, 400, 721
BseMI	GCAATG	2 cut(s)	251, 572
BseMII	CTCAG	3 cut(s)	34, 401, 722
BseRI	GAGGAG	4 cut(s)	222, 365, 543, 686
BseXI	GCAGC	2 cut(s)	475, 800
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	1008
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	9, 401, 722
BslFI	GGGAC	2 cut(s)	389, 710
BslI	CCNNNNNNNGG	3 cut(s)	167, 400, 721
BsmFI	GGGAC	2 cut(s)	389, 710
BsnI	GGCC	1 cut(s)	1008
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	4 cut(s)	69, 185, 527, 851
Bsp19I	CCATGG	1 cut(s)	970
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	1008
BspCNI	CTCAG	3 cut(s)	33, 400, 721
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	6 cut(s)	231, 405, 472, 552, 726, 793
BspMAI	CTGCAG	4 cut(s)	270, 535, 591, 859
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	946
BsrDI	GCAATG	2 cut(s)	251, 572
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	4 cut(s)	69, 185, 527, 851
BssT1I	CCWWGG	1 cut(s)	970
Bst4CI	ACNGT	2 cut(s)	290, 611
Bst6I	CTCTTC	2 cut(s)	518, 842
BstAFI	CTTAAG	1 cut(s)	946
BstBAI	YACGTR	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	14, 80, 216
BstDEI	CTNAG	3 cut(s)	20, 387, 708
BstDSI	CCRYGG	1 cut(s)	970
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	3 cut(s)	220, 541, 907
BstKTI	GATC	4 cut(s)	72, 188, 530, 854
BstMBI	GATC	4 cut(s)	69, 185, 527, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 1014
BstNSI	RCATGY	4 cut(s)	244, 344, 565, 665
BstSFI	CTRYAG	4 cut(s)	266, 531, 587, 855
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	475, 800
BstV2I	GAAGAC	2 cut(s)	420, 741
BstX2I	RGATCY	3 cut(s)	69, 527, 851
BstYI	RGATCY	3 cut(s)	69, 527, 851
BsuRI	GGCC	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	970
Cac8I	GCNNGC	3 cut(s)	14, 80, 216
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	1035
CfoI	GCGC	3 cut(s)	220, 541, 907
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	403, 724
CseI	GACGC	2 cut(s)	341, 662
CviAII	CATG	6 cut(s)	241, 341, 562, 662, 971, 1036
DdeI	CTNAG	3 cut(s)	20, 387, 708
DpnI	GATC	4 cut(s)	71, 187, 529, 853
DpnII	GATC	4 cut(s)	69, 185, 527, 851
Eam1104I	CTCTTC	2 cut(s)	518, 842
EarI	CTCTTC	2 cut(s)	518, 842
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	970
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	403, 724
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	970
FaeI	CATG	6 cut(s)	244, 344, 565, 665, 974, 1039
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	2 cut(s)	389, 710
FatI	CATG	6 cut(s)	240, 340, 561, 661, 970, 1035
Fnu4HI	GCNGC	3 cut(s)	182, 489, 814
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	182, 489, 814
GlaI	GCGC	3 cut(s)	219, 540, 906
GluI	GCNGC	3 cut(s)	182, 489, 814
GsuI	CTGGAG	4 cut(s)	219, 297, 540, 618
HaeIII	GGCC	1 cut(s)	1008
HapII	CCGG	3 cut(s)	9, 401, 722
HgaI	GACGC	2 cut(s)	341, 662
HhaI	GCGC	3 cut(s)	220, 541, 907
Hin1II	CATG	6 cut(s)	244, 344, 565, 665, 974, 1039
Hin6I	GCGC	3 cut(s)	218, 539, 905
HinP1I	GCGC	3 cut(s)	218, 539, 905
HinfI	GANTC	2 cut(s)	136, 952
HpaII	CCGG	3 cut(s)	9, 401, 722
HphI	GGTGA	2 cut(s)	423, 744
Hpy188III	TCNNGA	8 cut(s)	35, 91, 236, 314, 557, 635, 932, 1036
HpyAV	CCTTC	9 cut(s)	61, 295, 404, 405, 416, 616, 725, 726, 737
HpyCH4III	ACNGT	2 cut(s)	290, 611
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 1014
HpyF3I	CTNAG	3 cut(s)	20, 387, 708
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	6 cut(s)	244, 344, 565, 665, 974, 1039
HspAI	GCGC	3 cut(s)	218, 539, 905
Kzo9I	GATC	4 cut(s)	69, 185, 527, 851
LmnI	GCTCC	3 cut(s)	235, 556, 934
Lsp1109I	GCAGC	2 cut(s)	475, 800
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	205, 445, 766
MalI	GATC	4 cut(s)	71, 187, 529, 853
MboI	GATC	4 cut(s)	69, 185, 527, 851
MboII	GAAGA	5 cut(s)	73, 420, 535, 741, 859
MflI	RGATCY	3 cut(s)	69, 527, 851
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	5 cut(s)	56, 171, 359, 680, 881
MseI	TTAA	4 cut(s)	465, 786, 876, 947
MslI	CAYNNNNRTG	1 cut(s)	975
MspCI	CTTAAG	1 cut(s)	946
MspI	CCGG	3 cut(s)	9, 401, 722
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	37, 1014
NcoI	CCATGG	1 cut(s)	970
NdeII	GATC	4 cut(s)	69, 185, 527, 851
NlaIII	CATG	6 cut(s)	244, 344, 565, 665, 974, 1039
NlaIV	GGNNCC	6 cut(s)	231, 405, 472, 552, 726, 793
NspI	RCATGY	4 cut(s)	244, 344, 565, 665
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	1035
PciI	ACATGT	2 cut(s)	340, 661
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	136, 952
PkrI	GCNGC	3 cut(s)	183, 490, 815
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	2 cut(s)	340, 661
Psp124BI	GAGCTC	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	192
PspN4I	GGNNCC	6 cut(s)	231, 405, 472, 552, 726, 793
PspPI	GGNCC	2 cut(s)	403, 724
PstI	CTGCAG	4 cut(s)	270, 535, 591, 859
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	3 cut(s)	69, 527, 851
RseI	CAYNNNNRTG	1 cut(s)	975
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	465, 786, 876, 947
SatI	GCNGC	3 cut(s)	182, 489, 814
Sau3AI	GATC	4 cut(s)	69, 185, 527, 851
Sau96I	GGNCC	2 cut(s)	403, 724
SduI	GDGCHC	2 cut(s)	8, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	4 cut(s)	266, 531, 587, 855
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	403, 724
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	3 cut(s)	35, 41, 946
SmoI	CTYRAG	3 cut(s)	35, 41, 946
Sse9I	AATT	5 cut(s)	56, 171, 359, 680, 881
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	970
TaaI	ACNGT	2 cut(s)	290, 611
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	27, 36, 54, 92
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	56, 171, 359, 680, 881
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	136, 952
Tru1I	TTAA	4 cut(s)	465, 786, 876, 947
Tru9I	TTAA	4 cut(s)	465, 786, 876, 947
TseI	GCWGC	2 cut(s)	488, 813
Vha464I	CTTAAG	1 cut(s)	946
VpaK11BI	GGWCC	2 cut(s)	403, 724
XceI	RCATGY	4 cut(s)	244, 344, 565, 665
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.