Rmu_sc0005006.1_g000002

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005006.1
N/A
Physical Location & Seq
Reverse (-)
11409 .. 12509
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005006.1_g000002.1.cds

Sequence Viewer

Length: 696 bp
atgacatcaacaacaacaatcaacaccttaccagattggtttatcaaagtggtagcagagaaagcagagaaactacagtacctaaagtgcaaaggcctaaagaacattcttgtggaacatgacagagggaggttacatggactgaagtatctagctgtaaatgggccccatgagtacttggcagtgttgatggaaacaataacacgggtgacagatgtatctgtgttcaagaacttggaagagttgcatctccttggtgtgagttttctgaaggagttatgtgttggtgaattaccacttgggtctctattcaatctcaagtcattaaaggtggaatattgccatgacttgcctactgccgcacgccttgcacacctgcgcacccacctgcacaacagcccacgctgctgcctacccagctcgcctacctctcgcaagactgctgcctgcgtcccttgcgcgtgctgctgcccggccggcctacccagctcacctcctctcgcccatcagccctgcactcggctgtctagctgctgcccttgtaagccttcgccggagctccctacagcccaacgctcagcagcagcccacggcaacctgcaggtcgtcgtcgcccacggcggctgtacccagcgtctgagacctccttgctgcctagcacctctgctgcatcgcttccgactgccagcgaaatag

Protein Analysis

231

Amino Acids

25.25

Weight (kDa)

9.06

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 384, 396
Acc16I TGCGCA 1 cut(s) 380
Acc36I ACCTGC 4 cut(s) 384, 396, 592, 606
AccII CGCG 1 cut(s) 461
AciI CCGC 2 cut(s) 360, 621
AcoI YGGCCR 1 cut(s) 474
AcuI CTGAAG 2 cut(s) 164, 290
AfaI GTAC 3 cut(s) 80, 176, 628
AfiI CCNNNNNNNGG 1 cut(s) 519
AgsI TTSAA 2 cut(s) 229, 313
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 5 cut(s) 155, 420, 489, 531, 559
AluI AGCT 5 cut(s) 155, 420, 489, 531, 559
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 2 cut(s) 309, 634
AlwNI CAGNNNCTG 1 cut(s) 637
AoxI GGCC 4 cut(s) 94, 164, 474, 478
ApaI GGGCCC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 381, 461
AspS9I GGNCC 2 cut(s) 164, 165
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 3 cut(s) 220, 299, 483
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 6 cut(s) 62, 95, 131, 164, 201, 234
BanII GRGCYC 2 cut(s) 168, 561
Bbv12I GWGCWC 1 cut(s) 561
BccI CCATC 2 cut(s) 184, 513
BceAI ACGGC 2 cut(s) 607, 634
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 309, 634
BfaI CTAG 3 cut(s) 152, 528, 656
BfmI CTRYAG 3 cut(s) 74, 564, 599
BfuAI ACCTGC 4 cut(s) 384, 396, 592, 606
BglI GCCNNNNNGGC 1 cut(s) 477
BlpI GCTNAGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 164, 165
BmiI GGNNCC 2 cut(s) 166, 167
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 256, 679
Bpu1102I GCTNAGC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 473
BsaI GGTCTC 2 cut(s) 309, 634
BsaJI CCNNGG 3 cut(s) 253, 589, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 519
Bse118I RCCGGY 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 253, 589, 616
BseLI CCNNNNNNNGG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 591, 629
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 474
BseYI CCCAGC 3 cut(s) 416, 485, 630
BsgI GTGCAG 2 cut(s) 374, 499
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 4 cut(s) 96, 166, 476, 480
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 3 cut(s) 473, 477, 554
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 519
BsmAI GTCTC 2 cut(s) 309, 634
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 4 cut(s) 96, 166, 476, 480
Bso31I GGTCTC 2 cut(s) 309, 634
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 168, 561
Bsp1720I GCTNAGC 1 cut(s) 577
BspACI CCGC 2 cut(s) 360, 621
BspANI GGCC 4 cut(s) 96, 166, 476, 480
BspCNI CTCAG 2 cut(s) 590, 630
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 2 cut(s) 166, 167
BspMAI CTGCAG 1 cut(s) 603
BspMI ACCTGC 4 cut(s) 384, 396, 592, 606
BspTNI GGTCTC 2 cut(s) 309, 634
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 3 cut(s) 253, 589, 616
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 6 cut(s) 364, 422, 448, 463, 478, 687
BstDEI CTNAG 2 cut(s) 577, 638
BstDSI CCRYGG 2 cut(s) 589, 616
BstFNI CGCG 1 cut(s) 461
BstHHI GCGC 2 cut(s) 381, 461
BstMAI GTCTC 2 cut(s) 309, 634
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 8 cut(s) 62, 368, 405, 417, 456, 465, 477, 486
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 3 cut(s) 74, 564, 599
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 461
BstZI CGGCCG 1 cut(s) 474
BsuRI GGCC 4 cut(s) 96, 166, 476, 480
BtgI CCRYGG 2 cut(s) 589, 616
BtgZI GCGATG 1 cut(s) 656
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
BveI ACCTGC 4 cut(s) 384, 396, 592, 606
Cac8I GCNNGC 6 cut(s) 364, 422, 448, 463, 478, 687
CaiI CAGNNNCTG 1 cut(s) 637
CfoI GCGC 2 cut(s) 381, 461
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 164, 165
CseI GACGC 2 cut(s) 439, 623
Csp6I GTAC 3 cut(s) 79, 175, 627
CviAII CATG 4 cut(s) 119, 137, 170, 344
CviQI GTAC 3 cut(s) 79, 175, 627
DdeI CTNAG 2 cut(s) 577, 638
EaeI YGGCCR 1 cut(s) 474
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 559
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 168, 561
Eco31I GGTCTC 2 cut(s) 309, 634
Eco52I CGGCCG 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 2 cut(s) 164, 290
EcoICRI GAGCTC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 168, 561
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 122, 140, 173, 347
FaiI YATR 5 cut(s) 120, 138, 171, 280, 345
FaqI GGGAC 1 cut(s) 437
FatI CATG 4 cut(s) 118, 136, 169, 343
FriOI GRGCYC 2 cut(s) 168, 561
FseI GGCCGGCC 1 cut(s) 480
FspBI CTAG 3 cut(s) 152, 528, 656
FspI TGCGCA 1 cut(s) 380
GlaI GCGC 2 cut(s) 380, 460
GsaI CCCAGC 3 cut(s) 420, 489, 634
HaeIII GGCC 4 cut(s) 96, 166, 476, 480
HapII CCGG 3 cut(s) 473, 477, 554
HgaI GACGC 2 cut(s) 439, 623
HhaI GCGC 2 cut(s) 381, 461
Hin1II CATG 4 cut(s) 122, 140, 173, 347
Hin6I GCGC 2 cut(s) 379, 459
HinP1I GCGC 2 cut(s) 379, 459
HpaII CCGG 3 cut(s) 473, 477, 554
HphI GGTGA 3 cut(s) 220, 299, 483
Hpy188I TCNGA 3 cut(s) 270, 639, 680
Hpy188III TCNNGA 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 611, 614
HpyAV CCTTC 2 cut(s) 265, 558
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 7 cut(s) 90, 247, 371, 391, 516, 601, 670
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 368, 405, 417, 456, 465, 477, 486
HpyF3I CTNAG 2 cut(s) 577, 638
Hsp92II CATG 4 cut(s) 122, 140, 173, 347
HspAI GCGC 2 cut(s) 379, 459
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
LmnI GCTCC 2 cut(s) 556, 564
LweI GCATC 2 cut(s) 256, 679
MaeI CTAG 3 cut(s) 152, 528, 656
MaeIII GTNAC 2 cut(s) 132, 208
MboII GAAGA 1 cut(s) 251
MhlI GDGCHC 2 cut(s) 168, 561
MluCI AATT 1 cut(s) 290
MnlI CCTC 7 cut(s) 119, 123, 439, 504, 507, 654, 672
MroNI GCCGGC 1 cut(s) 476
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 3 cut(s) 473, 477, 554
MspR9I CCNGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 8 cut(s) 62, 368, 405, 417, 456, 465, 477, 486
NaeI GCCGGC 1 cut(s) 478
NciI CCSGG 1 cut(s) 473
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 4 cut(s) 122, 140, 173, 347
NlaIV GGNNCC 2 cut(s) 166, 167
NmeAIII GCCGAG 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 380
PaqCI CACCTGC 2 cut(s) 384, 396
PceI AGGCCT 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 561
PspFI CCCAGC 3 cut(s) 416, 485, 630
PspN4I GGNNCC 2 cut(s) 166, 167
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 164, 165
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 637
RigI GGCCGGCC 1 cut(s) 480
RsaI GTAC 3 cut(s) 80, 176, 628
RsaNI GTAC 3 cut(s) 79, 175, 627
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 326
Sau96I GGNCC 2 cut(s) 164, 165
SbfI CCTGCAGG 1 cut(s) 603
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 473
SdaI CCTGCAGG 1 cut(s) 603
SduI GDGCHC 2 cut(s) 168, 561
SfaNI GCATC 2 cut(s) 256, 679
SfcI CTRYAG 3 cut(s) 74, 564, 599
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse8387I CCTGCAGG 1 cut(s) 603
Sse9I AATT 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 2 cut(s) 360, 621
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 152, 528, 656
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 78
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 362, 624
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspRI CASTG 1 cut(s) 189
XspI CTAG 3 cut(s) 152, 528, 656
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.