Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005017.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14575 .. 18759

Gene Structure 4185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggttcgtgatggtggttcttacttctccaccgttggatatgtgatcgaacggtcacggtcatcgtcggcgccaccgggactcgctaccacgacgcgctcttcttcttcgatatcaacttcctgtcagactacccgacccggccgtccaatgtgcattaccgctcctacgggttacgggtcaacccaaatctttacgagcgtgtacgtctgcgtgagcctgctcaacacctggaccggaaagaagagggagaagtgggacccggctcagttcaccatcctccaggttctggtctcgatccaggtgcttgttttgaacgagagtcgtatttcaacgaaccggaaacgagagagagaaagggagaggagagatgcgaccgcccaacgcccagcacccaggccgcctacccagcctagtccgcctaggcggccgcctggagacccaacgcctactgacttcgcccaggccaaaatcggaacgacgcaggaatccggtcaccagttcgatagccggattttagattctggtcaccggtggccggattcctatcaccggtcgtcgaagtccgtcactggagtcagcggccggccactggtcatcggatcgaccgccgccaccggaaaccagaccctgccaccgcatagacgccaaccctctccactgccactgacaccagcctcgccgccgcaacgcaaagtccggtcacgctgccttaacccacgtcgaagcccgaccgagctacatcaaaaccagtttgatgcagtccgatccagcacgccgccgccaccatccagcccctccatcacgtcgtcgatcatggagatcaagaaggcgcctcggcgacgctcgacccacgttgtgtcgcctcccactgagagcaagatttcttctggtgctcgtcgccaaaaccatctagagctggacttgaaccataacccctctccaagaagctatcgggcctctagttttcaaattcccgtcaagcagcagcctctaacaggtgaggcgagccaacgccgcccaggcgctccgccagacaagaagaagagtgcaaaccctagaccaagaaacagtccgggttttgtggaactcaataaaggtatctttatagttattcaaaatcaattttggaatctgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

380

Amino Acids

42.04

Weight (kDa)

11.25

Isoelectric Point (pI)

74.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AccB1I	GGYRCC	2 cut(s)	70, 832
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	97
AclWI	GGATC	3 cut(s)	292, 610, 762
AcoI	YGGCCR	5 cut(s)	142, 428, 536, 583, 587
AcsI	RAATTY	1 cut(s)	972
AcyI	GRCGYC	3 cut(s)	71, 646, 833
AdeI	CACNNNGTG	1 cut(s)	859
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	289, 538, 552, 592, 998
AgeI	ACCGGT	2 cut(s)	531, 552
AgsI	TTSAA	5 cut(s)	316, 333, 928, 971, 1118
AjiI	CACGTC	2 cut(s)	722, 807
AjnI	CCWGG	7 cut(s)	230, 282, 300, 395, 433, 462, 1021
AluBI	AGCT	3 cut(s)	739, 919, 951
AluI	AGCT	3 cut(s)	739, 919, 951
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	2 cut(s)	298, 432
AlwI	GGATC	3 cut(s)	292, 610, 762
AlwNI	CAGNNNCTG	2 cut(s)	289, 631
AoxI	GGCC	8 cut(s)	142, 398, 428, 465, 536, 583, 587, 957
ApeKI	GCWGC	3 cut(s)	708, 985, 988
ApoI	RAATTY	1 cut(s)	972
AsiGI	ACCGGT	2 cut(s)	531, 552
AspA2I	CCTAGG	1 cut(s)	422
AspLEI	GCGC	4 cut(s)	73, 99, 835, 1028
AspS9I	GGNCC	3 cut(s)	234, 259, 957
AsuC2I	CCSGG	4 cut(s)	78, 141, 263, 1077
AsuHPI	GGTGA	5 cut(s)	265, 488, 521, 542, 1013
AvaII	GGWCC	2 cut(s)	234, 259
AvrII	CCTAGG	1 cut(s)	422
BanI	GGYRCC	2 cut(s)	70, 832
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	3 cut(s)	695, 997, 1000
BccI	CCATC	5 cut(s)	5, 284, 796, 809, 918
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	7 cut(s)	232, 284, 302, 397, 435, 464, 1023
BcnI	CCSGG	4 cut(s)	78, 141, 263, 1077
BcoDI	GTCTC	2 cut(s)	298, 432
BfaI	CTAG	5 cut(s)	414, 423, 914, 963, 1059
BfoI	RGCGCY	3 cut(s)	74, 836, 1029
BglI	GCCNNNNNGGC	2 cut(s)	427, 1023
BlnI	CCTAGG	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	234, 259
BmgBI	CACGTC	2 cut(s)	722, 807
BmgT120I	GGNCC	3 cut(s)	234, 259, 957
BmiI	GGNNCC	4 cut(s)	72, 260, 261, 834
BmsI	GCATC	2 cut(s)	361, 748
BpmI	CTGGAG	3 cut(s)	266, 456, 594
BpuMI	CCSGG	4 cut(s)	78, 141, 263, 1077
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	3 cut(s)	71, 646, 833
BsaI	GGTCTC	2 cut(s)	298, 432
BsaJI	CCNNGG	5 cut(s)	395, 422, 462, 836, 1021
BsaWI	WCCGGW	7 cut(s)	236, 339, 491, 531, 552, 617, 699
Bsc4I	CCNNNNNNNGG	5 cut(s)	289, 538, 552, 592, 998
Bse118I	RCCGGY	3 cut(s)	531, 552, 585
Bse1I	ACTGG	4 cut(s)	499, 577, 597, 751
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	7 cut(s)	232, 284, 302, 397, 435, 464, 1023
BseDI	CCNNGG	5 cut(s)	395, 422, 462, 836, 1021
BseGI	GGATG	2 cut(s)	276, 788
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	5 cut(s)	289, 538, 552, 592, 998
BseMII	CTCAG	2 cut(s)	281, 864
BseNI	ACTGG	4 cut(s)	499, 577, 597, 751
BseRI	GAGGAG	1 cut(s)	379
BseX3I	CGGCCG	3 cut(s)	142, 428, 583
BseXI	GCAGC	3 cut(s)	695, 997, 1000
BseYI	CCCAGC	2 cut(s)	388, 408
Bsh1236I	CGCG	1 cut(s)	97
Bsh1285I	CGRYCG	7 cut(s)	145, 378, 431, 557, 586, 609, 735
BshFI	GGCC	8 cut(s)	144, 400, 430, 467, 538, 585, 589, 959
BshNI	GGYRCC	2 cut(s)	70, 832
BshTI	ACCGGT	2 cut(s)	531, 552
BsiEI	CGRYCG	7 cut(s)	145, 378, 431, 557, 586, 609, 735
BsiHKAI	GWGCWC	1 cut(s)	898
BslFI	GGGAC	2 cut(s)	93, 272
BslI	CCNNNNNNNGG	5 cut(s)	289, 538, 552, 592, 998
BsmAI	GTCTC	2 cut(s)	298, 432
BsmFI	GGGAC	2 cut(s)	93, 272
BsnI	GGCC	8 cut(s)	144, 400, 430, 467, 538, 585, 589, 959
Bso31I	GGTCTC	2 cut(s)	298, 432
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp143I	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
BspANI	GGCC	8 cut(s)	144, 400, 430, 467, 538, 585, 589, 959
BspCNI	CTCAG	2 cut(s)	280, 865
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	72, 260, 261, 834
BspPI	GGATC	3 cut(s)	292, 610, 762
BspQI	GCTCTTC	1 cut(s)	106
BspT107I	GGYRCC	2 cut(s)	70, 832
BspTNI	GGTCTC	2 cut(s)	298, 432
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	3 cut(s)	531, 552, 585
BsrI	ACTGG	4 cut(s)	499, 577, 597, 751
BssAI	RCCGGY	3 cut(s)	531, 552, 585
BssECI	CCNNGG	5 cut(s)	395, 422, 462, 836, 1021
BssMI	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
BssNI	GRCGYC	3 cut(s)	71, 646, 833
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	7 cut(s)	232, 284, 302, 397, 435, 464, 1023
Bst4CI	ACNGT	4 cut(s)	34, 54, 60, 1073
Bst6I	CTCTTC	3 cut(s)	106, 239, 1040
BstACI	GRCGYC	3 cut(s)	71, 646, 833
BstC8I	GCNNGC	4 cut(s)	221, 587, 776, 1009
BstDEI	CTNAG	2 cut(s)	267, 873
BstEII	GGTNACC	2 cut(s)	494, 527
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	2 cut(s)	276, 788
BstFNI	CGCG	1 cut(s)	97
BstH2I	RGCGCY	3 cut(s)	74, 836, 1029
BstHHI	GCGC	4 cut(s)	73, 99, 835, 1028
BstKTI	GATC	6 cut(s)	48, 300, 605, 770, 816, 825
BstMAI	GTCTC	2 cut(s)	298, 432
BstMBI	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
BstMCI	CGRYCG	7 cut(s)	145, 378, 431, 557, 586, 609, 735
BstMWI	GCNNNNNNNGC	5 cut(s)	409, 418, 427, 1017, 1023
BstNI	CCWGG	7 cut(s)	232, 284, 302, 397, 435, 464, 1023
BstPI	GGTNACC	2 cut(s)	494, 527
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	695, 997, 1000
BstZI	CGGCCG	3 cut(s)	142, 428, 583
BsuRI	GGCC	8 cut(s)	144, 400, 430, 467, 538, 585, 589, 959
BtrI	CACGTC	2 cut(s)	722, 807
BtsCI	GGATG	2 cut(s)	276, 788
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	5 cut(s)	570, 590, 659, 665, 870
Cac8I	GCNNGC	4 cut(s)	221, 587, 776, 1009
CaiI	CAGNNNCTG	2 cut(s)	289, 631
CciNI	GCGGCCGC	1 cut(s)	428
CfoI	GCGC	4 cut(s)	73, 99, 835, 1028
Cfr10I	RCCGGY	3 cut(s)	531, 552, 585
Cfr13I	GGNCC	3 cut(s)	234, 259, 957
CseI	GACGC	4 cut(s)	103, 490, 654, 852
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	2 cut(s)	531, 552
CviAII	CATG	1 cut(s)	817
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	267, 873
DinI	GGCGCC	2 cut(s)	72, 834
DpnI	GATC	6 cut(s)	47, 299, 604, 769, 815, 824
DpnII	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
DraIII	CACNNNGTG	1 cut(s)	859
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
EaeI	YGGCCR	5 cut(s)	142, 428, 536, 583, 587
EagI	CGGCCG	3 cut(s)	142, 428, 583
Eam1104I	CTCTTC	3 cut(s)	106, 239, 1040
EarI	CTCTTC	3 cut(s)	106, 239, 1040
EciI	GGCGGA	2 cut(s)	408, 1020
EclXI	CGGCCG	3 cut(s)	142, 428, 583
Eco130I	CCWWGG	1 cut(s)	422
Eco31I	GGTCTC	2 cut(s)	298, 432
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	234, 259
Eco52I	CGGCCG	3 cut(s)	142, 428, 583
Eco91I	GGTNACC	2 cut(s)	494, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	259
EcoO65I	GGTNACC	2 cut(s)	494, 527
EcoRII	CCWGG	7 cut(s)	230, 282, 300, 395, 433, 462, 1021
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	422
EgeI	GGCGCC	2 cut(s)	72, 834
EheI	GGCGCC	2 cut(s)	72, 834
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	1 cut(s)	820
FaiI	YATR	5 cut(s)	42, 642, 818, 933, 1109
FaqI	GGGAC	2 cut(s)	93, 272
FatI	CATG	1 cut(s)	816
FokI	GGATG	2 cut(s)	263, 775
FseI	GGCCGGCC	1 cut(s)	589
FspBI	CTAG	5 cut(s)	414, 423, 914, 963, 1059
GlaI	GCGC	4 cut(s)	72, 98, 834, 1027
GsaI	CCCAGC	2 cut(s)	392, 412
GsuI	CTGGAG	3 cut(s)	266, 456, 594
HaeII	RGCGCY	3 cut(s)	74, 836, 1029
HaeIII	GGCC	8 cut(s)	144, 400, 430, 467, 538, 585, 589, 959
HgaI	GACGC	4 cut(s)	103, 490, 654, 852
HhaI	GCGC	4 cut(s)	73, 99, 835, 1028
Hin1I	GRCGYC	3 cut(s)	71, 646, 833
Hin1II	CATG	1 cut(s)	820
Hin6I	GCGC	4 cut(s)	71, 97, 833, 1026
HinP1I	GCGC	4 cut(s)	71, 97, 833, 1026
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	7 cut(s)	81, 322, 488, 521, 542, 576, 1132
HphI	GGTGA	5 cut(s)	265, 488, 521, 542, 1013
Hpy166II	GTNNAC	3 cut(s)	183, 205, 273
Hpy188I	TCNGA	4 cut(s)	129, 476, 602, 767
Hpy188III	TCNNGA	4 cut(s)	8, 295, 826, 914
Hpy8I	GTNNAC	3 cut(s)	183, 205, 273
Hpy99I	CGWCG	9 cut(s)	70, 97, 484, 562, 726, 811, 814, 846, 903
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	4 cut(s)	34, 54, 60, 1073
HpyCH4IV	ACGT	4 cut(s)	207, 721, 806, 855
HpyCH4V	TGCA	3 cut(s)	156, 761, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	409, 418, 427, 1017, 1023
HpyF3I	CTNAG	2 cut(s)	267, 873
HpySE526I	ACGT	4 cut(s)	207, 721, 806, 855
Hsp92I	GRCGYC	3 cut(s)	71, 646, 833
Hsp92II	CATG	1 cut(s)	820
HspAI	GCGC	4 cut(s)	71, 97, 833, 1026
KasI	GGCGCC	2 cut(s)	70, 832
KflI	GGGWCCC	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	585
KroNI	GCCGGC	1 cut(s)	587
Kzo9I	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	169, 1033
Lsp1109I	GCAGC	3 cut(s)	695, 997, 1000
LweI	GCATC	2 cut(s)	361, 748
MaeI	CTAG	5 cut(s)	414, 423, 914, 963, 1059
MaeII	ACGT	4 cut(s)	207, 721, 806, 855
MaeIII	GTNAC	6 cut(s)	54, 173, 494, 527, 568, 702
MalI	GATC	6 cut(s)	47, 299, 604, 769, 815, 824
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
MboII	GAAGA	7 cut(s)	93, 96, 99, 256, 879, 1054, 1057
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	2 cut(s)	972, 1124
Mly113I	GGCGCC	2 cut(s)	71, 833
MlyI	GAGTC	3 cut(s)	75, 331, 585
MmeI	TCCRAC	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	585
MseI	TTAA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	582
MvaI	CCWGG	7 cut(s)	232, 284, 302, 397, 435, 464, 1023
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	5 cut(s)	409, 418, 427, 1017, 1023
NaeI	GCCGGC	1 cut(s)	587
NarI	GGCGCC	2 cut(s)	71, 833
NciI	CCSGG	4 cut(s)	78, 141, 263, 1077
NdeII	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
NgoMIV	GCCGGC	1 cut(s)	585
NlaIII	CATG	1 cut(s)	820
NlaIV	GGNNCC	4 cut(s)	72, 260, 261, 834
NmeAIII	GCCGAG	1 cut(s)	817
NmuCI	GTSAC	5 cut(s)	54, 494, 527, 568, 702
NotI	GCGGCCGC	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	587
PfeI	GAWTC	4 cut(s)	488, 521, 542, 1132
PflMI	CCANNNNNTGG	1 cut(s)	289
PinAI	ACCGGT	2 cut(s)	531, 552
PleI	GAGTC	3 cut(s)	75, 330, 584
PluTI	GGCGCC	2 cut(s)	74, 836
PpsI	GAGTC	3 cut(s)	75, 330, 584
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	7 cut(s)	230, 282, 300, 395, 433, 462, 1021
PspEI	GGTNACC	2 cut(s)	494, 527
PspFI	CCCAGC	2 cut(s)	388, 408
PspGI	CCWGG	7 cut(s)	230, 282, 300, 395, 433, 462, 1021
PspN4I	GGNNCC	4 cut(s)	72, 260, 261, 834
PspPI	GGNCC	3 cut(s)	234, 259, 957
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	289, 631
RigI	GGCCGGCC	1 cut(s)	589
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	714
Sau3AI	GATC	6 cut(s)	45, 297, 602, 767, 813, 822
Sau96I	GGNCC	3 cut(s)	234, 259, 957
SchI	GAGTC	3 cut(s)	75, 331, 585
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	2 cut(s)	361, 748
SfoI	GGCGCC	2 cut(s)	72, 834
SgrAI	CRCCGGYG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	234, 259
Sse9I	AATT	2 cut(s)	972, 1124
SspDI	GGCGCC	2 cut(s)	70, 832
SspMI	CTAG	5 cut(s)	414, 423, 914, 963, 1059
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	4 cut(s)	34, 54, 60, 1073
TaiI	ACGT	4 cut(s)	210, 724, 809, 858
TaqI	TCGA	9 cut(s)	48, 110, 296, 504, 560, 605, 724, 812, 848
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	2 cut(s)	972, 1124
TfiI	GAWTC	4 cut(s)	488, 521, 542, 1132
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	5 cut(s)	577, 597, 666, 672, 877
TseFI	GTSAC	5 cut(s)	54, 494, 527, 568, 702
TseI	GCWGC	3 cut(s)	708, 985, 988
Tsp45I	GTSAC	5 cut(s)	54, 494, 527, 568, 702
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	5 cut(s)	577, 597, 666, 672, 877
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	234, 259
XagI	CCTNNNNNAGG	1 cut(s)	996
XapI	RAATTY	1 cut(s)	972
XbaI	TCTAGA	1 cut(s)	913
XmaJI	CCTAGG	1 cut(s)	422
XspI	CTAG	5 cut(s)	414, 423, 914, 963, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.