Rmu_sc0005017.1_g000009

Dihydrolipoyl dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005017.1
N/A
Physical Location & Seq
Forward (+)
52536 .. 56678
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
atggaggccaacagcatcctagaccagtttgcaatgaagacaaaggctaaagagatcgagatcagaggtctgggcagcgtggtcgactgcaaagtgggtctgaaaaccgccatcgtagagggagatgtggtgggtggaacatgtgttaacagaggatgtgttccatctaaagctcttcttgcagtgagtggtcggatgcaggagcttcaaaaggaacatcaccttaaggctttgggtttgcagttttcagcagctggttatgacagacagggagtggccgatcatgcaaacaatcttgcatcaaaaatccgttctagtttgaccaattccatgaagtcgcttggagtggacatactaactggttttggtacaatcctgggcattgaagttgatggtaagaatatactttccccctcccatgtatacaatgggaagattgtcattaccaacgaccatgcactaaaattggagtatattcctgattggattgctatcgttgggagtggttacattggtcttgagttcagtgatgtgtatacagcacttggaagtgaggtactggactcttcttcactgcatttgcgcttcatttcaagtgtgcttcatggtattggcaggttggtgtgcgaggacataactgggggtctagaggatattgccattccagctagcaatttggtcgatgatccgcctgttgctttgccagttgatgttgtaaatatggttatcttagcaagcataaaagagttaaggcttcaagctgctagtgcattgttttcacttatttgtgaggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004148 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006082 GO:0006084 GO:0006085 GO:0006086 GO:0006090 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032787 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046685 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
Pyr_redox_2 Pyr_redox_dim

Protein Analysis

265

Amino Acids

28.11

Weight (kDa)

5.35

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 33 - 186 1.8e-11 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 606
AccI GTMKAC 3 cut(s) 84, 423, 536
AciI CCGC 2 cut(s) 108, 689
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 2 cut(s) 370, 558
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 4 cut(s) 209, 386, 594, 758
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 5 cut(s) 173, 205, 254, 668, 761
AluI AGCT 5 cut(s) 173, 205, 254, 668, 761
AlwI GGATC 1 cut(s) 680
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 2 cut(s) 6, 276
ApeKI GCWGC 3 cut(s) 75, 251, 761
AspLEI GCGC 1 cut(s) 585
AsuHPI GGTGA 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 87, 263, 748
BccI CCATC 3 cut(s) 119, 172, 386
BcgI CGANNNNNNTGC 4 cut(s) 64, 98, 661, 695
BciT130I CCWGG 1 cut(s) 377
BfaI CTAG 5 cut(s) 20, 315, 647, 669, 765
BfrI CTTAAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 3 cut(s) 76, 252, 762
BlsI GCNGC 3 cut(s) 77, 253, 763
Bme1390I CCNGG 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 3 cut(s) 24, 186, 308
BmtI GCTAGC 1 cut(s) 672
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 539
BsaBI GATNNNNATC 2 cut(s) 59, 491
BsaJI CCNNGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse1I ACTGG 5 cut(s) 25, 364, 564, 643, 704
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 2 cut(s) 59, 491
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 15, 161, 201
BseJI GATNNNNATC 2 cut(s) 59, 491
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 5 cut(s) 25, 364, 564, 643, 704
BseXI GCAGC 3 cut(s) 87, 263, 748
BshFI GGCC 2 cut(s) 8, 278
BsnI GGCC 2 cut(s) 8, 278
Bsp143I GATC 4 cut(s) 54, 60, 280, 685
BspACI CCGC 2 cut(s) 108, 689
BspANI GGCC 2 cut(s) 8, 278
BspMI ACCTGC 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 1 cut(s) 680
BspQI GCTCTTC 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 5 cut(s) 25, 364, 564, 643, 704
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 4 cut(s) 54, 60, 280, 685
BssNAI GTATAC 2 cut(s) 424, 537
Bst1107I GTATAC 2 cut(s) 424, 537
Bst2UI CCWGG 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 180, 571
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 670, 736
BstDEI CTNAG 1 cut(s) 730
BstF5I GGATG 3 cut(s) 15, 161, 201
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 4 cut(s) 57, 63, 283, 688
BstMBI GATC 4 cut(s) 54, 60, 280, 685
BstMWI GCNNNNNNNGC 4 cut(s) 179, 284, 665, 767
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 87, 263, 748
BstV2I GAAGAC 1 cut(s) 44
BstZ17I GTATAC 2 cut(s) 424, 537
BsuRI GGCC 2 cut(s) 8, 278
BtsCI GGATG 3 cut(s) 15, 161, 201
BtsI GCAGTG 2 cut(s) 189, 572
BtsIMutI CAGTG 3 cut(s) 189, 532, 572
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 670, 736
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 585
Csp6I GTAC 2 cut(s) 369, 557
CviAII CATG 6 cut(s) 141, 284, 331, 419, 455, 605
CviQI GTAC 2 cut(s) 369, 557
DdeI CTNAG 1 cut(s) 730
DpnI GATC 4 cut(s) 56, 62, 282, 687
DpnII GATC 4 cut(s) 54, 60, 280, 685
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 180, 571
EarI CTCTTC 2 cut(s) 180, 571
EciI GGCGGA 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 6 cut(s) 144, 287, 334, 422, 458, 608
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 6 cut(s) 140, 283, 330, 418, 454, 604
FblI GTMKAC 3 cut(s) 84, 423, 536
Fnu4HI GCNGC 3 cut(s) 76, 252, 762
FokI GGATG 3 cut(s) 2, 168, 208
Fsp4HI GCNGC 3 cut(s) 76, 252, 762
FspBI CTAG 5 cut(s) 20, 315, 647, 669, 765
GlaI GCGC 1 cut(s) 584
GluI GCNGC 3 cut(s) 76, 252, 762
HaeIII GGCC 2 cut(s) 8, 278
HhaI GCGC 1 cut(s) 585
Hin1II CATG 6 cut(s) 144, 287, 334, 422, 458, 608
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HincII GTYRAC 2 cut(s) 85, 148
HindII GTYRAC 2 cut(s) 85, 148
HinfI GANTC 1 cut(s) 563
HpaI GTTAAC 1 cut(s) 148
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 5 cut(s) 85, 148, 349, 424, 537
Hpy188I TCNGA 3 cut(s) 65, 102, 195
Hpy188III TCNNGA 4 cut(s) 58, 479, 518, 647
Hpy8I GTNNAC 5 cut(s) 85, 148, 349, 424, 537
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 284, 665, 767
HpyF3I CTNAG 1 cut(s) 730
Hsp92II CATG 6 cut(s) 144, 287, 334, 422, 458, 608
HspAI GCGC 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 4 cut(s) 54, 60, 280, 685
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 3 cut(s) 87, 263, 748
LweI GCATC 3 cut(s) 24, 186, 308
MaeI CTAG 5 cut(s) 20, 315, 647, 669, 765
MaeIII GTNAC 1 cut(s) 506
MalI GATC 4 cut(s) 56, 62, 282, 687
MboI GATC 4 cut(s) 54, 60, 280, 685
MboII GAAGA 5 cut(s) 49, 167, 445, 558, 561
MluCI AATT 3 cut(s) 325, 464, 673
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 8 cut(s) 59, 112, 146, 424, 547, 622, 643, 784
MseI TTAA 3 cut(s) 147, 225, 749
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 4 cut(s) 179, 284, 665, 767
NdeII GATC 4 cut(s) 54, 60, 280, 685
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 6 cut(s) 144, 287, 334, 422, 458, 608
NspI RCATGY 1 cut(s) 144
PciI ACATGT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 77, 253, 763
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PscI ACATGT 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 370, 558
RsaNI GTAC 2 cut(s) 369, 557
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 147, 225, 749
SatI GCNGC 3 cut(s) 76, 252, 762
Sau3AI GATC 4 cut(s) 54, 60, 280, 685
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 3 cut(s) 24, 186, 308
SmlI CTYRAG 2 cut(s) 224, 518
SmoI CTYRAG 2 cut(s) 224, 518
Sse9I AATT 3 cut(s) 325, 464, 673
SsiI CCGC 2 cut(s) 108, 689
SspMI CTAG 5 cut(s) 20, 315, 647, 669, 765
StyD4I CCNGG 1 cut(s) 375
TaqI TCGA 3 cut(s) 57, 84, 681
TasI AATT 3 cut(s) 325, 464, 673
Tru1I TTAA 3 cut(s) 147, 225, 749
Tru9I TTAA 3 cut(s) 147, 225, 749
TscAI CASTG 3 cut(s) 189, 532, 579
TseI GCWGC 3 cut(s) 75, 251, 761
TspDTI ATGAA 4 cut(s) 50, 347, 577, 593
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 3 cut(s) 189, 532, 579
Vha464I CTTAAG 1 cut(s) 224
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 84, 423, 536
XspI CTAG 5 cut(s) 20, 315, 647, 669, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.