Rmu_sc0005033.1_g000018

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005033.1
OG0031332
Physical Location & Seq
Reverse (-)
63319 .. 64425
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
atgataaacatcacggtatcatacctcgtctccgcaactgacgtcgtgtaccattggcaatatgtcgcaaataagcttgacaatgacttgttcatcaggcttaccatggatgttgtcaatgtaactggctctcaaactggagaaaagactctaagagctacattcctggccttgtttcttggagactccgcaagactactctccgtgcaccactacaattatgagcaatggctacgaaaggcaagccacgctccggaggctttgctttctagggttcctcaagtactcatcaacttcaagaggaagtcggactacgtcaagcagccaattctgaaagctggtttgaagtggattattcagaaaatgatcgagttgcaaacgcccatgttgactttcaatccctacggcggaagaatggctgagattgcggcatctgcaaaaccttttccacatagagctggcaatctctggaaggttcagtatgcaacaaactgggacgcttctgggtcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

170

Amino Acids

19.34

Weight (kDa)

9.66

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031332)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005033.1_g000018 Rmu_sc0007362.1_g000025

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 4 cut(s) 33, 189, 408, 428
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 50, 285
AfiI CCNNNNNNNGG 2 cut(s) 253, 407
AgsI TTSAA 3 cut(s) 298, 346, 397
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 4 cut(s) 76, 158, 338, 458
AluI AGCT 4 cut(s) 76, 158, 338, 458
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 34, 177
Alw44I GTGCAC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 507
AvaII GGWCC 1 cut(s) 507
BaeGI GKGCMC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 34, 177
BfaI CTAG 2 cut(s) 270, 511
BisI GCNGC 2 cut(s) 323, 429
BlsI GCNGC 2 cut(s) 324, 430
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 507
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 276, 508
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 407
Bse1I ACTGG 3 cut(s) 130, 142, 497
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 253, 407
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 130, 142, 497
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 253, 407
BsmAI GTCTC 2 cut(s) 34, 177
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 4 cut(s) 33, 189, 408, 428
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 276, 508
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 3 cut(s) 130, 142, 497
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 244, 460
BstDEI CTNAG 2 cut(s) 152, 420
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 34, 177
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 248, 257, 425, 434
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 244, 460
Cfr13I GGNCC 1 cut(s) 507
CseI GACGC 1 cut(s) 506
Csp6I GTAC 2 cut(s) 49, 284
CviAII CATG 2 cut(s) 106, 385
CviQI GTAC 2 cut(s) 49, 284
DdeI CTNAG 2 cut(s) 152, 420
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EciI GGCGGA 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 109, 388
FaiI YATR 7 cut(s) 22, 63, 107, 222, 386, 453, 483
FaqI GGGAC 1 cut(s) 509
FatI CATG 2 cut(s) 105, 384
Fnu4HI GCNGC 2 cut(s) 323, 429
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 323, 429
FspBI CTAG 2 cut(s) 270, 511
GluI GCNGC 2 cut(s) 323, 429
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 109, 388
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 148, 185
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 49, 208, 390
Hpy188I TCNGA 3 cut(s) 310, 333, 360
Hpy188III TCNNGA 3 cut(s) 254, 298, 469
Hpy8I GTNNAC 3 cut(s) 49, 208, 390
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 42, 315
HpyCH4V TGCA 4 cut(s) 208, 376, 437, 485
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 257, 425, 434
HpyF3I CTNAG 2 cut(s) 152, 420
HpySE526I ACGT 2 cut(s) 42, 315
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 109, 388
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 440
MaeI CTAG 2 cut(s) 270, 511
MaeII ACGT 2 cut(s) 42, 315
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 217, 327
MlyI GAGTC 2 cut(s) 142, 179
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 35, 250, 288, 294
MroI TCCGGA 1 cut(s) 253
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 248, 257, 425, 434
NcoI CCATGG 1 cut(s) 105
NdeII GATC 1 cut(s) 366
NlaIII CATG 2 cut(s) 109, 388
NlaIV GGNNCC 2 cut(s) 276, 508
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 324, 430
PleI GAGTC 2 cut(s) 142, 179
PpsI GAGTC 2 cut(s) 142, 179
PpuMI RGGWCCY 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 276, 508
PspPI GGNCC 1 cut(s) 507
PspPPI RGGWCCY 1 cut(s) 507
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 2 cut(s) 50, 285
RsaNI GTAC 2 cut(s) 49, 284
SatI GCNGC 2 cut(s) 323, 429
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 507
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 2 cut(s) 142, 179
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 27, 45, 78, 160, 318, 340, 445, 460, 477
SfaNI GCATC 1 cut(s) 440
SinI GGWCC 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 2 cut(s) 217, 327
SsiI CCGC 4 cut(s) 33, 189, 408, 428
SspMI CTAG 2 cut(s) 270, 511
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 45, 318
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 217, 327
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 431
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 314
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 507
XspI CTAG 2 cut(s) 270, 511
ZraI GACGTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.