Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005069.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55144 .. 56418

Gene Structure 1275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgagatttcgtcgaattcctgtcaccggccgccacccaccaaacttctctaaaaacctcgccggagttccttttagagacgtcgtcaccttcaccactctaatcaacggctttgttctccacaatcaagtgcctgaggctgcacgaattttcaccaaaatgttggaggcaggtcattgtaagcccaatgtggttacgttcaacacgctaatgaagggcttttgcatgaggggagacaacactgctgcgattcaattacttgggaagatggaagaagaaagaggatgcgagcctaacatagtttcctttagcaccatcattgacagtctttgcaaggacacactaattgatgaagcattcaacctcttctcagaaatgatcagtagaggtattactccagacgttgttacttacacgtctttgattcacggagtttgcaaactaggccagtggaaacaagctacgaggttgcttgatgaaatgttgagtaaaggtatctttccagatgtttgcaccttcaatgtcttggttaatactttctgtaaggaagggatggtcatggaagccaaaagtatgattcaaaagatgattcaaagacatattcagcctgatacgattacatacaactcacttatggacggttactgtttgcgaggagaaatggacaaggcaagacaagtttttgatgttatgattagcaagggctccatggttgatgttcagagctgtagcatattgctacatggttattgcaagggtaaaatgctcgataaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

259

Amino Acids

29.12

Weight (kDa)

8.5

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	26 - 75	9.4e-14	PPR repeat family
PPR_3	PF13812	27 - 74	1.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	60 - 91	1.3e-10	PPR repeat
PPR_2	PF13041	62 - 112	9.6e-16	PPR repeat family
PPR_3	PF13812	62 - 108	3.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	94 - 126	4.5e-13	PPR repeat
PPR_2	PF13041	98 - 147	1.4e-18	PPR repeat family
PPR	PF01535	101 - 131	6.1e-07	PPR repeat
PPR_long	PF17177	114 - 185	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	122 - 182	2.5e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	129 - 161	8.1e-13	PPR repeat
PPR_2	PF13041	133 - 182	1.9e-18	PPR repeat family
PPR	PF01535	136 - 166	4e-08	PPR repeat
PPR_1	PF12854	164 - 196	1.1e-10	PPR repeat
PPR_2	PF13041	168 - 216	7.1e-15	PPR repeat family
PPR_1	PF12854	200 - 231	4.4e-12	PPR repeat
PPR_2	PF13041	203 - 252	1.3e-14	PPR repeat family
PPR	PF01535	206 - 235	1.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	161
AciI	CCGC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	15, 147
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	6 cut(s)	202, 254, 361, 520, 581, 593
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	2 cut(s)	461, 726
AluI	AGCT	2 cut(s)	461, 726
Alw26I	GTCTC	2 cut(s)	72, 228
AoxI	GGCC	2 cut(s)	28, 445
ApeKI	GCWGC	2 cut(s)	140, 245
ApoI	RAATTY	2 cut(s)	15, 147
AsuHPI	GGTGA	4 cut(s)	16, 79, 85, 145
AxyI	CCTNAGG	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	127, 232
BccI	CCATC	3 cut(s)	262, 323, 547
BceAI	ACGGC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	72, 228
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	31, 141, 246
BlsI	GCNGC	3 cut(s)	32, 142, 247
BmgBI	CACGTC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	706
BmsI	GCATC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	448
Bse21I	CCTNAGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	290, 558
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	126, 384
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	669
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	127, 232
BsgI	GTGCAG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	30, 447
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	27, 63
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	72, 228
BsmBI	CGTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	30, 447
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	30, 447
BspCNI	CTCAG	2 cut(s)	127, 383
BspLI	GGNNCC	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	3 cut(s)	326, 641, 647
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	135, 370
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	290, 558
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	2 cut(s)	72, 228
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	127, 232
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstZI	CGGCCG	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	30, 447
BtgI	CCRYGG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	290, 558
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 455
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	26
CviAII	CATG	4 cut(s)	226, 559, 709, 743
DdeI	CTNAG	2 cut(s)	135, 370
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	28
EagI	CGGCCG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EclXI	CGGCCG	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	707
Eco52I	CGGCCG	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	4 cut(s)	229, 562, 712, 746
FatI	CATG	4 cut(s)	225, 558, 708, 742
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	31, 141, 246
FokI	GGATG	2 cut(s)	297, 565
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	3 cut(s)	31, 141, 246
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	31, 141, 246
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	30, 447
HapII	CCGG	2 cut(s)	27, 63
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	229, 562, 712, 746
HinfI	GANTC	4 cut(s)	250, 424, 577, 589
HpaII	CCGG	2 cut(s)	27, 63
HphI	GGTGA	4 cut(s)	16, 79, 85, 145
Hpy188I	TCNGA	2 cut(s)	373, 723
Hpy188III	TCNNGA	2 cut(s)	398, 503
Hpy99I	CGWCG	2 cut(s)	15, 86
HpyAV	CCTTC	4 cut(s)	100, 208, 526, 542
HpyCH4III	ACNGT	3 cut(s)	326, 641, 647
HpyCH4IV	ACGT	4 cut(s)	81, 197, 402, 416
HpyCH4V	TGCA	6 cut(s)	143, 225, 333, 438, 513, 753
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	135, 370
HpySE526I	ACGT	4 cut(s)	81, 197, 402, 416
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	229, 562, 712, 746
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	710
LpnPI	CCDG	9 cut(s)	33, 40, 76, 147, 156, 411, 461, 516, 621
Lsp1109I	GCAGC	2 cut(s)	127, 232
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	4 cut(s)	81, 197, 402, 416
MaeIII	GTNAC	5 cut(s)	22, 85, 193, 406, 641
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	4 cut(s)	277, 284, 287, 358
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	4 cut(s)	15, 147, 254, 345
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	9 cut(s)	68, 130, 160, 222, 275, 374, 380, 459, 647
MseI	TTAA	2 cut(s)	531, 778
MslI	CAYNNNNRTG	2 cut(s)	158, 209
MspI	CCGG	2 cut(s)	27, 63
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	4 cut(s)	229, 562, 712, 746
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	2 cut(s)	22, 85
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	4 cut(s)	250, 424, 577, 589
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	32, 142, 247
PspN4I	GGNNCC	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	83
RseI	CAYNNNNRTG	2 cut(s)	158, 209
SaqAI	TTAA	2 cut(s)	531, 778
SatI	GCNGC	3 cut(s)	31, 141, 246
Sau3AI	GATC	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	2 cut(s)	158, 209
Sse9I	AATT	4 cut(s)	15, 147, 254, 345
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	326, 641, 647
TaiI	ACGT	4 cut(s)	84, 200, 405, 419
TaqI	TCGA	2 cut(s)	13, 768
TasI	AATT	4 cut(s)	15, 147, 254, 345
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	4 cut(s)	250, 424, 577, 589
Tru1I	TTAA	2 cut(s)	531, 778
Tru9I	TTAA	2 cut(s)	531, 778
TscAI	CASTG	2 cut(s)	247, 455
TseFI	GTSAC	2 cut(s)	22, 85
TseI	GCWGC	2 cut(s)	140, 245
Tsp45I	GTSAC	2 cut(s)	22, 85
TspDTI	ATGAA	3 cut(s)	227, 366, 492
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	247, 455
Tth111I	GACNNNGTC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	15, 147
XspI	CTAG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.