Rmu_sc0005091.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005091.1
N/A
Physical Location & Seq
Forward (+)
40021 .. 40389
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgttgaatgaacctacactctactttcccatgcttgactcaacaggcttggattaccacagttgggtaactgatgttgagaaccacctcacttcaaagggaatattacccataatccaagcacctaacccggatcgtatgttcgtgcaaacacctacaaagcatgctcatgtagttatcttgatgcgacaccatatggacaaagcactcagattggagtatatgtcgatcaaggattcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcactggagcaatctgcgctttgctgatttcatgtctgttgctgaatataattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

14.25

Weight (kDa)

5.72

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AfeI AGCGCT 2 cut(s) 258, 269
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 7, 96, 240, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 258, 269
AspLEI GCGC 3 cut(s) 259, 270, 330
AsuC2I CCSGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 2 cut(s) 260, 271
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 2 cut(s) 133, 228
BspCNI CTCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 320
BssMI GATC 2 cut(s) 133, 228
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 260, 271
BstHHI GCGC 3 cut(s) 259, 270, 330
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstMWI GCNNNNNNNGC 2 cut(s) 265, 327
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 3 cut(s) 259, 270, 330
CviAII CATG 4 cut(s) 31, 164, 170, 343
CviJI RGCY 2 cut(s) 48, 247
CviKI_1 RGCY 2 cut(s) 48, 247
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47III AGCGCT 2 cut(s) 258, 269
FaeI CATG 4 cut(s) 34, 167, 173, 346
FatI CATG 4 cut(s) 30, 163, 169, 342
FauNDI CATATG 1 cut(s) 195
FspBI CTAG 1 cut(s) 260
GlaI GCGC 3 cut(s) 258, 269, 329
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 2 cut(s) 260, 271
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 259, 270, 330
Hin1II CATG 4 cut(s) 34, 167, 173, 346
Hin6I GCGC 3 cut(s) 257, 268, 328
HinP1I GCGC 3 cut(s) 257, 268, 328
HinfI GANTC 3 cut(s) 38, 236, 287
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 2 cut(s) 181, 240
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 327
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 4 cut(s) 34, 167, 173, 346
HspAI GCGC 3 cut(s) 257, 268, 328
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 30, 144, 301, 312
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MluCI AATT 1 cut(s) 361
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 98, 302, 305
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 265, 327
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 4 cut(s) 34, 167, 173, 346
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 236, 287
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 16, 90, 127, 157, 249, 312
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 361
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 361
TfiI GAWTC 2 cut(s) 236, 287
TscAI CASTG 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 24, 331, 354
TspRI CASTG 1 cut(s) 320
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.