Rmu_sc0005091.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005091.1
N/A
Physical Location & Seq
Forward (+)
139757 .. 140254
498 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgcttgacttaacaggctcggattaccatagttgggtgaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggaacctaagccaaatctcgtgttcacacaaacacctacaaagcatgctcaagtagtcattttgataggacatcatatggacaaagcactcagattggagtacatgtcgatcaaagatgcaagagagctatgggtagcgctagaagagagctttggcaatgtccaagattccctcctccctgacttgaaggttgaatggaaaaatttgtgcttcgctgacttcaagtctattgctaaatataattcagaagctcttcgcctagaatccatgttgagattttgcggacaacctatcatagagcaagtgctaattgagaaaactctctccaccttcatcgtttcagccattatggtatcagagcaatatcgtaccgaggtcaatgctggatggatcataaggtttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

165

Amino Acids

18.97

Weight (kDa)

5.65

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 2 cut(s) 191, 460
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 217, 240, 341
AluI AGCT 3 cut(s) 217, 240, 341
AlwI GGATC 1 cut(s) 488
Aor51HI AGCGCT 1 cut(s) 228
ApoI RAATTY 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 49
BauI CACGAG 1 cut(s) 107
BccI CCATC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 230, 350
BfoI RGCGCY 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 482
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 34
Bsp143I GATC 2 cut(s) 198, 480
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 488
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 2 cut(s) 198, 480
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 228, 348
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 96, 179
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 482
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 201, 483
BstMBI GATC 2 cut(s) 198, 480
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 137, 196
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 190, 459
CviAII CATG 3 cut(s) 134, 193, 358
CviJI RGCY 6 cut(s) 18, 100, 217, 240, 341, 434
CviKI_1 RGCY 6 cut(s) 18, 100, 217, 240, 341, 434
CviQI GTAC 2 cut(s) 190, 459
DdeI CTNAG 2 cut(s) 96, 179
DpnI GATC 2 cut(s) 200, 482
DpnII GATC 2 cut(s) 198, 480
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 228, 348
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 2 cut(s) 228, 348
Eco47III AGCGCT 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 137, 196, 361
FatI CATG 3 cut(s) 133, 192, 357
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 489
FspBI CTAG 2 cut(s) 230, 350
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HhaI GCGC 1 cut(s) 229
Hin1II CATG 3 cut(s) 137, 196, 361
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 257, 353
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 22, 182, 337, 448
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 271, 430
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 96, 179
Hsp92II CATG 3 cut(s) 137, 196, 361
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 198, 480
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 4 cut(s) 74, 101, 282, 459
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 230, 350
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 200, 482
MboI GATC 2 cut(s) 198, 480
MboII GAAGA 2 cut(s) 245, 335
MluCI AATT 3 cut(s) 292, 331, 399
MnlI CCTC 4 cut(s) 68, 272, 275, 457
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 198, 480
NlaIII CATG 3 cut(s) 137, 196, 361
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 2 cut(s) 137, 196
PaeI GCATGC 1 cut(s) 137
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 257, 353
PfoI TCCNGGA 1 cut(s) 87
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
RsaI GTAC 2 cut(s) 191, 460
RsaNI GTAC 2 cut(s) 190, 459
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 2 cut(s) 198, 480
ScrFI CCNGG 1 cut(s) 89
SfaNI GCATC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 3 cut(s) 292, 331, 399
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 230, 350
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 197
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 292, 331, 399
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 257, 353
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 412, 482
XapI RAATTY 1 cut(s) 292
XceI RCATGY 2 cut(s) 137, 196
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 230, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.