Rmu_sc0005104.1_g000010

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005104.1
N/A
Physical Location & Seq
Forward (+)
55358 .. 56038
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005104.1_g000010.1.cds

Sequence Viewer

Length: 267 bp
atgaaccagtaccacatatacgaggccatcggccgtggaaagtgctcgactgtgtacaaagggaggaagaagaagacgattgagtacttcgccattaagagcgtcgagaaatctcagaagagcaagcttcttcaggaagttaagattcttcataccctagatcatcagaatattctcaagttttattggtggtacgaaacttctgctcacttgtggttagttctggagtattgcgttggcgggaatttgatgacattgttagaccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

89

Amino Acids

10.6

Weight (kDa)

9.25

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 4 cut(s) 11, 56, 86, 194
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 47
AoxI GGCC 2 cut(s) 24, 31
ApoI RAATTY 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BfaI CTAG 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 7
BseX3I CGGCCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 26, 33
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 47
BsnI GGCC 2 cut(s) 26, 33
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 26, 33
BspCNI CTCAG 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 34
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 80
BstZI CGGCCG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 26, 33
BtgI CCRYGG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 125
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 10, 55, 85, 193
CviJI RGCY 3 cut(s) 26, 33, 127
CviKI_1 RGCY 3 cut(s) 26, 33, 127
CviQI GTAC 4 cut(s) 10, 55, 85, 193
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 116
FaiI YATR 3 cut(s) 17, 19, 153
FauI CCCGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 2 cut(s) 26, 33
HgaI GACGC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 117, 168
Hpy188III TCNNGA 3 cut(s) 106, 134, 224
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 20, 119, 209
MaeI CTAG 1 cut(s) 158
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 6 cut(s) 79, 82, 85, 122, 130, 140
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 244
MnlI CCTC 2 cut(s) 16, 57
MseI TTAA 2 cut(s) 96, 141
NdeII GATC 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 145
RsaI GTAC 4 cut(s) 11, 56, 86, 194
RsaNI GTAC 4 cut(s) 10, 55, 85, 193
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 96, 141
Sau3AI GATC 1 cut(s) 160
ScaI AGTACT 1 cut(s) 86
SduI GDGCHC 1 cut(s) 47
SetI ASST 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 240
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 47, 105
TasI AATT 1 cut(s) 244
TatI WGTACW 2 cut(s) 54, 84
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 96, 141
Tru9I TTAA 2 cut(s) 96, 141
TspDTI ATGAA 2 cut(s) 17, 140
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.