Rmu_sc0005112.1_g000008

histone-lysine N-methyltransferase, H3 lysine-9 specific

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005112.1
N/A
Physical Location & Seq
Forward (+)
41160 .. 43707
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atggaagatagtgagtgtttttcccataccaagttgccagagtataagaggtgcagagtctctgctgttcgtgattatcctttagggtgtggaccatttgctcatttgagtaacttgaatgccaatgctacggagagaatttcagataagaaatatcttcctcaatcagtagaagctgttcgggattttcctcctttctgtgggataaatgcttctcctgaggccaggaaattcggccaagagaagtcagttagggattacaagtcatcatcatcaaagacagtgaagactaatgtgaaacaaacaggacttgagaacaaatttcaacctaacactgagaagaaaattggaggaaagtctctaaagaagaatcatcatgtaccagattcctgtgaccgatcgccggagtctgaagtccggcaaggactccgatga

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

9.34

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 3 cut(s) 138, 230, 320
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 200, 403
AgsI TTSAA 2 cut(s) 118, 326
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 64, 363
AoxI GGCC 2 cut(s) 222, 235
ApoI RAATTY 3 cut(s) 138, 230, 320
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 92
AvaII GGWCC 1 cut(s) 92
AxyI CCTNAGG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 64, 363
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 403
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 200, 403
BseMII CTCAG 2 cut(s) 210, 327
BsgI GTGCAG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 224, 237
BsiEI CGRYCG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 404, 418
BslI CCNNNNNNNGG 2 cut(s) 200, 403
BsmAI GTCTC 2 cut(s) 64, 363
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 224, 237
Bsp143I GATC 1 cut(s) 398
BspANI GGCC 2 cut(s) 224, 237
BspCNI CTCAG 2 cut(s) 211, 328
BssMI GATC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 219, 336
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 2 cut(s) 64, 363
BstMBI GATC 1 cut(s) 398
BstMCI CGRYCG 1 cut(s) 401
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 224, 237
BtsIMutI CAGTG 2 cut(s) 288, 333
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 380
CviAII CATG 1 cut(s) 377
CviJI RGCY 3 cut(s) 176, 224, 237
CviKI_1 RGCY 3 cut(s) 176, 224, 237
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 2 cut(s) 219, 336
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 380
FaiI YATR 3 cut(s) 27, 45, 378
FatI CATG 1 cut(s) 376
HaeIII GGCC 2 cut(s) 224, 237
HapII CCGG 2 cut(s) 404, 418
Hin1II CATG 1 cut(s) 380
HinfI GANTC 5 cut(s) 57, 370, 386, 407, 426
HpaII CCGG 2 cut(s) 404, 418
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 145, 412, 431
Hpy188III TCNNGA 3 cut(s) 71, 182, 218
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 219, 336
Hsp92II CATG 1 cut(s) 380
Kzo9I GATC 1 cut(s) 398
LpnPI CCDG 9 cut(s) 51, 211, 231, 238, 291, 396, 403, 417, 431
MaeIII GTNAC 2 cut(s) 110, 392
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 5 cut(s) 17, 149, 298, 352, 379
MluCI AATT 4 cut(s) 138, 230, 320, 345
MlyI GAGTC 3 cut(s) 66, 416, 420
MnlI CCTC 5 cut(s) 42, 171, 201, 214, 344
MroXI GAANNNNTTC 1 cut(s) 177
MspI CCGG 2 cut(s) 404, 418
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 226
NdeII GATC 1 cut(s) 398
NlaIII CATG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 392
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 370, 386
Ple19I CGATCG 1 cut(s) 401
PleI GAGTC 3 cut(s) 65, 415, 420
PpsI GAGTC 3 cut(s) 65, 415, 420
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PvuI CGATCG 1 cut(s) 401
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 398
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 3 cut(s) 66, 416, 420
ScrFI CCNGG 1 cut(s) 226
SetI ASST 3 cut(s) 53, 178, 331
SinI GGWCC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 138, 230, 320, 345
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 283
TaqII GACCGA 1 cut(s) 411
TasI AATT 4 cut(s) 138, 230, 320, 345
TfiI GAWTC 2 cut(s) 370, 386
TscAI CASTG 2 cut(s) 288, 340
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 288, 340
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 3 cut(s) 138, 230, 320
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.