Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005118.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

51596 .. 55667

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgagacccaccgtggctccgcctctgccttcggcctccgtccggcaagccccgagccaccgtcgccgcctgaaacgccacagaaccgtcgacgtcctcactttagcgaatttggcattggtcctcatgttggcggcttggtcttcggaagccacttctcgtagtctccaagatgcattagcttgggagaaggaggactgcttcaagatattcaaggagaatgaggcattcatagaatcttccaacaacgatggaaacaaactttacaaattgagtctgaatcaatttgcagaccttacaaatgaagagttcactgcctcaagaaatggattcaaggctcacgaatgttccacgaagactactactttcaagaatgaaaatgctactgtgccaactacaatggactggagaaagaagggagttgtaactcccatcaaggaccaaggccaatgtgtgggagctatggaaggaatcactcaacttacaactggtggccttatggacgacgcctttcagtttgtcattcaaaatcatggtataaataatttggctaattatccctacacggctgcggatggtacatgcaatgccaagaaggaagcaggccatgcagtcacaataactggccatgaagacgtgcctgcaaacagcgaaagcgcccttcttaaggtcgtggctaatcaacatatctctgttgctattgatgctagtggatctgacttccagttctattcaagtggtgtttacacagaaatatgtggaacgagtctagaccatggtgttatcgctgttggttatgacgtgagtgctgatgggacaaagtattggttggtaaagaggaactcatggggtgcagaaggttacataagaatgcaaaaagatgttgctgcaccggaaggtctccaatttctaatgttccggagcaaaaggaggtcatccactccaagctcgccgtcttcgccctcatcgactagctcgagcagctttgccagtccctctccctctccgtctccttccaagcccaccgtcaaaggcttcgggatccgcgaagtggatcaaaagtcagatcccgtagcccatcgactagccatagaggaaggactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

368

Amino Acids

39.96

Weight (kDa)

7.12

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	68 - 104	4.9e-10	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	163 - 296	1.6e-35	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	1047
AccIII	TCCGGA	1 cut(s)	918
AciI	CCGC	5 cut(s)	20, 67, 134, 572, 1045
AclWI	GGATC	5 cut(s)	721, 1036, 1049, 1061, 1062
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	93, 507
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	5 cut(s)	42, 130, 454, 667, 1051
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	6 cut(s)	205, 214, 334, 370, 527, 735
AjiI	CACGTC	2 cut(s)	637, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	5 cut(s)	182, 461, 948, 975, 984
AluI	AGCT	5 cut(s)	182, 461, 948, 975, 984
Alw26I	GTCTC	3 cut(s)	170, 905, 1014
AlwI	GGATC	5 cut(s)	721, 1036, 1049, 1061, 1062
Ama87I	CYCGRG	2 cut(s)	52, 976
Aor13HI	TCCGGA	1 cut(s)	918
AoxI	GGCC	5 cut(s)	33, 445, 493, 604, 625
ApeKI	GCWGC	3 cut(s)	569, 887, 981
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	121, 439
AvaI	CYCGRG	2 cut(s)	52, 976
AvaII	GGWCC	2 cut(s)	121, 439
BalI	TGGCCA	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	1041
BbsI	GAAGAC	4 cut(s)	135, 362, 639, 948
BbvI	GCAGC	3 cut(s)	556, 874, 993
BccI	CCATC	5 cut(s)	245, 440, 569, 806, 1086
BceAI	ACGGC	2 cut(s)	582, 937
BcoDI	GTCTC	3 cut(s)	170, 905, 1014
BfaI	CTAG	4 cut(s)	708, 770, 972, 1085
BfoI	RGCGCY	1 cut(s)	660
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	5 cut(s)	67, 135, 570, 888, 982
BlsI	GCNGC	5 cut(s)	68, 136, 571, 889, 983
Bme18I	GGWCC	2 cut(s)	121, 439
BmeT110I	CYCGRG	2 cut(s)	52, 976
BmgBI	CACGTC	2 cut(s)	637, 802
BmgT120I	GGNCC	2 cut(s)	121, 439
BmiI	GGNNCC	2 cut(s)	18, 1043
BmsI	GCATC	2 cut(s)	163, 694
BpiI	GAAGAC	4 cut(s)	135, 362, 639, 948
BpmI	CTGGAG	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	93, 507
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	3 cut(s)	12, 442, 775
BsaWI	WCCGGW	2 cut(s)	892, 918
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 130, 454, 667, 1051
Bse1I	ACTGG	5 cut(s)	410, 493, 628, 724, 990
Bse3DI	GCAATG	1 cut(s)	592
BseAI	TCCGGA	1 cut(s)	918
BseDI	CCNNGG	3 cut(s)	12, 442, 775
BseGI	GGATG	2 cut(s)	580, 935
BseLI	CCNNNNNNNGG	5 cut(s)	42, 130, 454, 667, 1051
BseMI	GCAATG	1 cut(s)	592
BseNI	ACTGG	5 cut(s)	410, 493, 628, 724, 990
BseXI	GCAGC	3 cut(s)	556, 874, 993
BsgI	GTGCAG	2 cut(s)	873, 873
Bsh1236I	CGCG	1 cut(s)	1047
BshFI	GGCC	5 cut(s)	35, 447, 495, 606, 627
BsiHKCI	CYCGRG	2 cut(s)	52, 976
BsiSI	CCGG	3 cut(s)	43, 893, 919
BslFI	GGGAC	2 cut(s)	829, 978
BslI	CCNNNNNNNGG	5 cut(s)	42, 130, 454, 667, 1051
BsmAI	GTCTC	3 cut(s)	170, 905, 1014
BsmBI	CGTCTC	1 cut(s)	1014
BsmFI	GGGAC	2 cut(s)	829, 978
BsmI	GAATGC	2 cut(s)	227, 876
BsnI	GGCC	5 cut(s)	35, 447, 495, 606, 627
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	2 cut(s)	52, 976
Bsp13I	TCCGGA	1 cut(s)	918
Bsp143I	GATC	4 cut(s)	713, 1041, 1054, 1066
Bsp19I	CCATGG	1 cut(s)	775
BspACI	CCGC	5 cut(s)	20, 67, 134, 572, 1045
BspANI	GGCC	5 cut(s)	35, 447, 495, 606, 627
BspEI	TCCGGA	1 cut(s)	918
BspFNI	CGCG	1 cut(s)	1047
BspLI	GGNNCC	2 cut(s)	18, 1043
BspPI	GGATC	5 cut(s)	721, 1036, 1049, 1061, 1062
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	410, 493, 628, 724, 990
BssECI	CCNNGG	3 cut(s)	12, 442, 775
BssMI	GATC	4 cut(s)	713, 1041, 1054, 1066
BssNI	GRCGYC	2 cut(s)	93, 507
BssT1I	CCWWGG	2 cut(s)	442, 775
Bst4CI	ACNGT	6 cut(s)	13, 62, 88, 388, 1027, 1104
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	2 cut(s)	93, 507
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	48, 604, 642, 950
BstDSI	CCRYGG	2 cut(s)	12, 775
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	580, 935
BstFNI	CGCG	1 cut(s)	1047
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	4 cut(s)	716, 1044, 1057, 1069
BstMAI	GTCTC	3 cut(s)	170, 905, 1014
BstMBI	GATC	4 cut(s)	713, 1041, 1054, 1066
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 75, 113, 608, 704, 958, 981
BstNSI	RCATGY	1 cut(s)	585
BstUI	CGCG	1 cut(s)	1047
BstV1I	GCAGC	3 cut(s)	556, 874, 993
BstV2I	GAAGAC	4 cut(s)	135, 362, 639, 948
BstX2I	RGATCY	3 cut(s)	713, 1041, 1066
BstYI	RGATCY	3 cut(s)	713, 1041, 1066
BsuRI	GGCC	5 cut(s)	35, 447, 495, 606, 627
BtgI	CCRYGG	2 cut(s)	12, 775
BtrI	CACGTC	2 cut(s)	637, 802
BtsCI	GGATG	2 cut(s)	580, 935
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	48, 604, 642, 950
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	121, 439
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	7 cut(s)	127, 533, 582, 608, 629, 776, 846
CviQI	GTAC	1 cut(s)	579
DpnI	GATC	4 cut(s)	715, 1043, 1056, 1068
DpnII	GATC	4 cut(s)	713, 1041, 1054, 1066
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	442, 775
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	2 cut(s)	121, 439
Eco88I	CYCGRG	2 cut(s)	52, 976
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	442, 775
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	442, 775
Esp3I	CGTCTC	1 cut(s)	1014
FaeI	CATG	7 cut(s)	130, 536, 585, 611, 632, 779, 849
FaqI	GGGAC	2 cut(s)	829, 978
FatI	CATG	7 cut(s)	126, 532, 581, 607, 628, 775, 845
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	67, 135, 570, 888, 982
FokI	GGATG	2 cut(s)	587, 922
Fsp4HI	GCNGC	5 cut(s)	67, 135, 570, 888, 982
FspBI	CTAG	4 cut(s)	708, 770, 972, 1085
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	5 cut(s)	67, 135, 570, 888, 982
GsuI	CTGGAG	1 cut(s)	427
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	35, 447, 495, 606, 627
HapII	CCGG	3 cut(s)	43, 893, 919
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	659
Hin1I	GRCGYC	2 cut(s)	93, 507
Hin1II	CATG	7 cut(s)	130, 536, 585, 611, 632, 779, 849
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	6 cut(s)	236, 274, 280, 330, 471, 766
HpaII	CCGG	3 cut(s)	43, 893, 919
Hpy166II	GTNNAC	3 cut(s)	91, 312, 745
Hpy188I	TCNGA	4 cut(s)	148, 279, 718, 1066
Hpy188III	TCNNGA	7 cut(s)	205, 321, 341, 370, 770, 919, 1039
Hpy8I	GTNNAC	3 cut(s)	91, 312, 745
Hpy99I	CGWCG	4 cut(s)	66, 92, 95, 509
HpyCH4III	ACNGT	6 cut(s)	13, 62, 88, 388, 1027, 1104
HpyCH4IV	ACGT	3 cut(s)	93, 636, 801
HpyCH4V	TGCA	8 cut(s)	176, 290, 585, 611, 644, 854, 874, 890
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 75, 113, 608, 704, 958, 981
HpySE526I	ACGT	3 cut(s)	93, 636, 801
Hsp92I	GRCGYC	2 cut(s)	93, 507
Hsp92II	CATG	7 cut(s)	130, 536, 585, 611, 632, 779, 849
HspAI	GCGC	1 cut(s)	657
Kpn2I	TCCGGA	1 cut(s)	918
Kzo9I	GATC	4 cut(s)	713, 1041, 1054, 1066
LmnI	GCTCC	3 cut(s)	22, 458, 921
Lsp1109I	GCAGC	3 cut(s)	556, 874, 993
LweI	GCATC	2 cut(s)	163, 694
MaeI	CTAG	4 cut(s)	708, 770, 972, 1085
MaeII	ACGT	3 cut(s)	93, 636, 801
MaeIII	GTNAC	3 cut(s)	424, 613, 860
MalI	GATC	4 cut(s)	715, 1043, 1056, 1068
MboI	GATC	4 cut(s)	713, 1041, 1054, 1066
MboII	GAAGA	6 cut(s)	135, 231, 317, 367, 644, 948
MflI	RGATCY	3 cut(s)	713, 1041, 1066
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	6 cut(s)	109, 269, 284, 544, 553, 905
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	2 cut(s)	283, 775
MmeI	TCCRAC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	178
MroI	TCCGGA	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	869
Msp20I	TGGCCA	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	3 cut(s)	43, 893, 919
Mva1269I	GAATGC	2 cut(s)	227, 876
MvnI	CGCG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	7 cut(s)	63, 75, 113, 608, 704, 958, 981
NcoI	CCATGG	1 cut(s)	775
NdeII	GATC	4 cut(s)	713, 1041, 1054, 1066
NlaIII	CATG	7 cut(s)	130, 536, 585, 611, 632, 779, 849
NlaIV	GGNNCC	2 cut(s)	18, 1043
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	976
PcsI	WCGNNNNNNNCGW	3 cut(s)	965, 974, 1044
PctI	GAATGC	2 cut(s)	227, 876
PfeI	GAWTC	4 cut(s)	236, 280, 330, 471
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	68, 136, 571, 889, 983
PleI	GAGTC	2 cut(s)	282, 774
PpsI	GAGTC	2 cut(s)	282, 774
PspN4I	GGNNCC	2 cut(s)	18, 1043
PspPI	GGNCC	2 cut(s)	121, 439
PspXI	VCTCGAGB	1 cut(s)	976
PsuI	RGATCY	3 cut(s)	713, 1041, 1066
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	869
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	5 cut(s)	67, 135, 570, 888, 982
Sau3AI	GATC	4 cut(s)	713, 1041, 1054, 1066
Sau96I	GGNCC	2 cut(s)	121, 439
SchI	GAGTC	2 cut(s)	283, 775
SfaNI	GCATC	2 cut(s)	163, 694
Sfr274I	CTCGAG	1 cut(s)	976
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	121, 439
SlaI	CTCGAG	1 cut(s)	976
SmiMI	CAYNNNNRTG	1 cut(s)	869
SmlI	CTYRAG	3 cut(s)	319, 665, 976
SmoI	CTYRAG	3 cut(s)	319, 665, 976
Sse9I	AATT	6 cut(s)	109, 269, 284, 544, 553, 905
SsiI	CCGC	5 cut(s)	20, 67, 134, 572, 1045
SspMI	CTAG	4 cut(s)	708, 770, 972, 1085
StyI	CCWWGG	2 cut(s)	442, 775
TaaI	ACNGT	6 cut(s)	13, 62, 88, 388, 1027, 1104
TaiI	ACGT	3 cut(s)	96, 639, 804
TaqI	TCGA	4 cut(s)	90, 968, 977, 1081
TasI	AATT	6 cut(s)	109, 269, 284, 544, 553, 905
TauI	GCSGC	2 cut(s)	69, 137
TfiI	GAWTC	4 cut(s)	236, 280, 330, 471
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	3 cut(s)	569, 887, 981
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	220, 318, 390, 645
TspGWI	ACGGA	2 cut(s)	28, 996
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	121, 439
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	585
XhoI	CTCGAG	1 cut(s)	976
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	4 cut(s)	708, 770, 972, 1085
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.