Rmu_sc0005122.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005122.1
N/A
Physical Location & Seq
Forward (+)
43759 .. 44531
773 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
atgggttcttcccagaaaagctcccaatggaggagcgtcttcgacggcgtgaaactcaagaccatcccatcaatgccagaagctctaatggccgagatcaacactgcaatttgcaatcttgaatacgcacgcgcctctgttcttctcgaatctacgtccccttcttcttcctcttcttcaatctcaaagaatgagagctctgctcaacctcagtttgatgcccggaaagcggatcaggcttacaaggcaggctgtgctgccttggctgctgggaagctcgatgaggctcttctgtcattgaatgtttcgctttcgaaatgcccacctgatcagacctctgccatcgaaacagtagccagacccaacagcagcggccatggaagatcgaaacagcaacctgtccaaaccattggtaatgatgtcgccgtcactgcaagtcgccgccgccgtaatcgaactcccaccgaacccaatctggagccacccccaccaaacgtcacccccggtgcgttaccgtctccaaacccgatcgaaccggcaaccagatcccactccggcagccatggcgatccgatctggtcccatactcctctcagcccttcgacccactcaccttcatctcccacaacgaaacaacctcaagcacaacaccagtccaacaataccatgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.7

Weight (kDa)

9.1

Isoelectric Point (pI)

75.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 230, 372, 442, 445
AclWI GGATC 3 cut(s) 240, 540, 563
AcoI YGGCCR 2 cut(s) 90, 373
AfiI CCNNNNNNNGG 2 cut(s) 30, 229
AgsI TTSAA 3 cut(s) 122, 180, 301
AluBI AGCT 4 cut(s) 21, 83, 198, 277
AluI AGCT 4 cut(s) 21, 83, 198, 277
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 3 cut(s) 240, 540, 563
AoxI GGCC 2 cut(s) 90, 373
ApeKI GCWGC 4 cut(s) 257, 266, 369, 558
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 2 cut(s) 223, 504
AsuHPI GGTGA 2 cut(s) 490, 603
AsuII TTCGAA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 579
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 4 cut(s) 244, 253, 381, 570
BccI CCATC 3 cut(s) 71, 76, 350
BceAI ACGGC 3 cut(s) 61, 410, 432
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 2 cut(s) 223, 504
BcoDI GTCTC 1 cut(s) 522
BisI GCNGC 7 cut(s) 258, 267, 370, 373, 442, 445, 559
BlsI GCNGC 7 cut(s) 259, 268, 371, 374, 443, 446, 560
Bme1390I CCNGG 2 cut(s) 223, 504
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 480, 581
BmrFI CCNGG 2 cut(s) 223, 504
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 41, 624
BpuMI CCSGG 2 cut(s) 223, 504
BsaJI CCNNGG 4 cut(s) 261, 376, 502, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 229
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 652
BseDI CCNNGG 4 cut(s) 261, 376, 502, 562
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 30, 229
BseMII CTCAG 2 cut(s) 224, 607
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 46, 579
BseXI GCAGC 4 cut(s) 244, 253, 381, 570
BseYI CCCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 92, 375
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 4 cut(s) 223, 504, 536, 555
BslFI GGGAC 2 cut(s) 142, 565
BslI CCNNNNNNNGG 2 cut(s) 30, 229
BsmAI GTCTC 1 cut(s) 522
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 142, 565
BsnI GGCC 2 cut(s) 92, 375
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
Bsp19I CCATGG 2 cut(s) 376, 562
BspACI CCGC 4 cut(s) 230, 372, 442, 445
BspANI GGCC 2 cut(s) 92, 375
BspCNI CTCAG 2 cut(s) 223, 606
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 480, 581
BspPI GGATC 3 cut(s) 240, 540, 563
BspQI GCTCTTC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 4 cut(s) 261, 376, 502, 562
BssMI GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
BssT1I CCWWGG 3 cut(s) 261, 376, 562
Bst4CI ACNGT 2 cut(s) 352, 516
Bst6I CTCTTC 2 cut(s) 178, 294
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 130, 250
BstDEI CTNAG 2 cut(s) 210, 593
BstDSI CCRYGG 2 cut(s) 376, 562
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 8 cut(s) 99, 235, 331, 386, 531, 548, 571, 576
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 9 cut(s) 89, 227, 236, 245, 254, 263, 266, 431, 564
BstSCI CCNGG 2 cut(s) 221, 502
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 244, 253, 381, 570
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 1 cut(s) 545
BsuRI GGCC 2 cut(s) 92, 375
BtgI CCRYGG 2 cut(s) 376, 562
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 2 cut(s) 102, 429
BtsIMutI CAGTG 2 cut(s) 102, 429
Cac8I GCNNGC 2 cut(s) 130, 250
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 579
CseI GACGC 1 cut(s) 25
CviAII CATG 3 cut(s) 377, 563, 667
DdeI CTNAG 2 cut(s) 210, 593
DpnI GATC 8 cut(s) 98, 234, 330, 385, 530, 547, 570, 575
DpnII GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
EaeI YGGCCR 2 cut(s) 90, 373
Eam1104I CTCTTC 2 cut(s) 178, 294
EarI CTCTTC 2 cut(s) 178, 294
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 261, 376, 562
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT14I CCWWGG 3 cut(s) 261, 376, 562
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 3 cut(s) 261, 376, 562
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 3 cut(s) 380, 566, 670
FaiI YATR 4 cut(s) 378, 564, 585, 668
FaqI GGGAC 2 cut(s) 142, 565
FatI CATG 3 cut(s) 376, 562, 666
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 7 cut(s) 258, 267, 370, 373, 442, 445, 559
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 7 cut(s) 258, 267, 370, 373, 442, 445, 559
GlaI GCGC 1 cut(s) 133
GluI GCNGC 7 cut(s) 258, 267, 370, 373, 442, 445, 559
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 2 cut(s) 92, 375
HapII CCGG 4 cut(s) 223, 504, 536, 555
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 380, 566, 670
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 149
HpaII CCGG 4 cut(s) 223, 504, 536, 555
HphI GGTGA 2 cut(s) 490, 603
Hpy188I TCNGA 2 cut(s) 333, 573
Hpy188III TCNNGA 4 cut(s) 58, 119, 146, 476
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 171, 609, 624
HpyCH4III ACNGT 2 cut(s) 352, 516
HpyCH4IV ACGT 2 cut(s) 155, 495
HpyCH4V TGCA 3 cut(s) 107, 114, 434
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 227, 236, 245, 254, 263, 266, 431, 564
HpyF3I CTNAG 2 cut(s) 210, 593
HpySE526I ACGT 2 cut(s) 155, 495
Hsp92II CATG 3 cut(s) 380, 566, 670
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 3 cut(s) 26, 33, 478
Lsp1109I GCAGC 4 cut(s) 244, 253, 381, 570
LweI GCATC 1 cut(s) 208
MaeII ACGT 2 cut(s) 155, 495
MaeIII GTNAC 3 cut(s) 427, 496, 510
MalI GATC 8 cut(s) 98, 234, 330, 385, 530, 547, 570, 575
MboI GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
MboII GAAGA 8 cut(s) 31, 134, 156, 159, 165, 168, 281, 393
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 108, 670
MnlI CCTC 8 cut(s) 24, 145, 181, 219, 277, 346, 600, 648
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 4 cut(s) 223, 504, 536, 555
MspR9I CCNGG 2 cut(s) 223, 504
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 9 cut(s) 89, 227, 236, 245, 254, 263, 266, 431, 564
NciI CCSGG 2 cut(s) 223, 504
NcoI CCATGG 2 cut(s) 376, 562
NdeII GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
NlaIII CATG 3 cut(s) 380, 566, 670
NlaIV GGNNCC 2 cut(s) 480, 581
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 427, 496
NspV TTCGAA 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 7 cut(s) 259, 268, 371, 374, 443, 446, 560
Ple19I CGATCG 1 cut(s) 531
Psp124BI GAGCTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 480, 581
PspPI GGNCC 1 cut(s) 579
PsuI RGATCY 1 cut(s) 545
PvuI CGATCG 1 cut(s) 531
SacI GAGCTC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 294
SatI GCNGC 7 cut(s) 258, 267, 370, 373, 442, 445, 559
Sau3AI GATC 8 cut(s) 96, 232, 328, 383, 528, 545, 568, 573
Sau96I GGNCC 1 cut(s) 579
ScrFI CCNGG 2 cut(s) 223, 504
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 1 cut(s) 579
SmlI CTYRAG 2 cut(s) 56, 639
SmoI CTYRAG 2 cut(s) 56, 639
Sse9I AATT 2 cut(s) 108, 670
SsiI CCGC 4 cut(s) 230, 372, 442, 445
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 221, 502
StyI CCWWGG 3 cut(s) 261, 376, 562
TaaI ACNGT 2 cut(s) 352, 516
TaiI ACGT 2 cut(s) 158, 498
TaqI TCGA 9 cut(s) 42, 147, 279, 314, 345, 386, 454, 531, 602
TasI AATT 2 cut(s) 108, 670
TauI GCSGC 3 cut(s) 375, 444, 447
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 109, 436
TseFI GTSAC 2 cut(s) 427, 496
TseI GCWGC 4 cut(s) 257, 266, 369, 558
Tsp45I GTSAC 2 cut(s) 427, 496
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 2 cut(s) 109, 436
VpaK11BI GGWCC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.