Rmu_sc0005142.1_g000042

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005142.1
N/A
Physical Location & Seq
Reverse (-)
189333 .. 193877
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
atgttagtctctttatttgcaatcttgcccactaaccgagctcgttcttatgatccaccatccaaatttcctgatccatattcacctactccttttatgtccttcgctgattatgtgcccatgttctggaggacccaacctggatcacgaataggaaacccgaccaattactgccacaccatctccaaatcttcgctggatagttccatagttgctagcgtagccaaacttggatctcaaatcatgagttgtggggtaattttgggcaatcaagtttgcctcctgatgagacacttgagaagatgggttgatgtgcctcctgtgactttggaattgctaatggctgactcctataagagcggaagcatatctcaggagctggctattaaggtcttggaagttccactcatccactttttctttgcctacttccgtaggatcttcaaaaatatttttagccacgcagagcagatttcacaggcgatgattgcaagaggtttcagaggggactgcaacacgcataaaatgtacctgttatcagatccatccattggtatagcagatgttgtttctttgttatgcctggctgaagatccatcaattctgaaattggaagttgccaagcattccctccaatgcagttgccggaggagtcgccgtgaaatcggccgcctccattttcctttccttgctcatagctctattgttcatcatcaggagaccgagccgtcctccaaagcctccagtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

250

Amino Acids

28.06

Weight (kDa)

9.23

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 727
AccB7I CCANNNNNTGG 2 cut(s) 126, 551
AccBSI CCGCTC 1 cut(s) 360
AciI CCGC 2 cut(s) 360, 670
AclWI GGATC 7 cut(s) 47, 68, 151, 241, 446, 536, 587
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 2 cut(s) 126, 551
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 139, 582
AluBI AGCT 3 cut(s) 41, 379, 699
AluI AGCT 3 cut(s) 41, 379, 699
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 3 cut(s) 13, 283, 713
AlwI GGATC 7 cut(s) 47, 68, 151, 241, 446, 536, 587
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 1 cut(s) 667
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 5 cut(s) 67, 188, 297, 553, 604
BceAI ACGGC 2 cut(s) 642, 712
BciT130I CCWGG 2 cut(s) 141, 584
BcoDI GTCTC 3 cut(s) 13, 283, 713
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 141, 584
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 141, 584
BmtI GCTAGC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 2 cut(s) 148, 727
BpuEI CTTGAG 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 713
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 643, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 551
Bse1I ACTGG 1 cut(s) 744
BseBI CCWGG 2 cut(s) 141, 584
BseGI GGATG 3 cut(s) 59, 408, 545
BseLI CCNNNNNNNGG 2 cut(s) 126, 551
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 1 cut(s) 664
BseSI GKGCMC 1 cut(s) 120
BseX3I CGGCCG 1 cut(s) 667
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 1 cut(s) 669
BsiEI CGRYCG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 646
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 126, 551
BsmAI GTCTC 3 cut(s) 13, 283, 713
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 713
Bsp1286I GDGCHC 2 cut(s) 43, 120
Bsp143I GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
BspACI CCGC 2 cut(s) 360, 670
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 134
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 7 cut(s) 47, 68, 151, 241, 446, 536, 587
BspTNI GGTCTC 1 cut(s) 713
BsrBI CCGCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 744
BssMI GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
Bst2UI CCWGG 2 cut(s) 141, 584
BstC8I GCNNGC 2 cut(s) 217, 381
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 59, 408, 545
BstKTI GATC 7 cut(s) 55, 76, 146, 236, 441, 544, 595
BstMAI GTCTC 3 cut(s) 13, 283, 713
BstMBI GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 2 cut(s) 221, 488
BstNI CCWGG 2 cut(s) 141, 584
BstSCI CCNGG 2 cut(s) 139, 582
BstSLI GKGCMC 1 cut(s) 120
BstX2I RGATCY 4 cut(s) 233, 438, 541, 592
BstYI RGATCY 4 cut(s) 233, 438, 541, 592
BstZI CGGCCG 1 cut(s) 667
BsuRI GGCC 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 497
BtsCI GGATG 3 cut(s) 59, 408, 545
Cac8I GCNNGC 2 cut(s) 217, 381
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 529
CviAII CATG 2 cut(s) 121, 244
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 1 cut(s) 372
DpnI GATC 7 cut(s) 54, 75, 145, 235, 440, 543, 594
DpnII GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 667
EagI CGGCCG 1 cut(s) 667
Ecl136II GAGCTC 1 cut(s) 41
EclXI CGGCCG 1 cut(s) 667
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 139, 582
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 2 cut(s) 124, 247
FaqI GGGAC 1 cut(s) 521
FatI CATG 2 cut(s) 120, 243
Fnu4HI GCNGC 1 cut(s) 670
FokI GGATG 3 cut(s) 46, 395, 532
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 670
GsuI CTGGAG 2 cut(s) 148, 727
HaeIII GGCC 1 cut(s) 669
HapII CCGG 1 cut(s) 646
Hin1II CATG 2 cut(s) 124, 247
HinfI GANTC 2 cut(s) 347, 652
HpaII CCGG 1 cut(s) 646
HphI GGTGA 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 503, 541, 606
Hpy188III TCNNGA 7 cut(s) 71, 127, 147, 244, 283, 374, 716
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 20, 491, 513, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 488
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 2 cut(s) 124, 247
Kzo9I GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
LmnI GCTCC 1 cut(s) 376
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 322
MalI GATC 7 cut(s) 54, 75, 145, 235, 440, 543, 594
MbiI CCGCTC 1 cut(s) 360
MboI GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
MboII GAAGA 4 cut(s) 183, 312, 433, 602
MflI RGATCY 4 cut(s) 233, 438, 541, 592
MhlI GDGCHC 2 cut(s) 43, 120
MluCI AATT 6 cut(s) 65, 166, 258, 332, 600, 608
MlyI GAGTC 2 cut(s) 341, 661
MseI TTAA 1 cut(s) 387
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 2 cut(s) 141, 584
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 141, 584
MwoI GCNNNNNNNGC 2 cut(s) 221, 488
NdeII GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 124, 247
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 1 cut(s) 243
PctI GAATGC 1 cut(s) 625
PflMI CCANNNNNTGG 2 cut(s) 126, 551
PkrI GCNGC 1 cut(s) 671
PleI GAGTC 2 cut(s) 341, 660
PpsI GAGTC 2 cut(s) 341, 660
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 139, 582
PspGI CCWGG 2 cut(s) 139, 582
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 132
PspPPI RGGWCCY 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 4 cut(s) 233, 438, 541, 592
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 7 cut(s) 52, 73, 143, 233, 438, 541, 592
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 2 cut(s) 341, 661
ScrFI CCNGG 2 cut(s) 141, 584
SduI GDGCHC 2 cut(s) 43, 120
SetI ASST 8 cut(s) 43, 88, 142, 381, 393, 499, 534, 701
SinI GGWCC 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 6 cut(s) 65, 166, 258, 332, 600, 608
SsiI CCGC 2 cut(s) 360, 670
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 139, 582
TaqII GACCGA 1 cut(s) 737
TasI AATT 6 cut(s) 65, 166, 258, 332, 600, 608
TauI GCSGC 1 cut(s) 672
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 698
TspGWI ACGGA 1 cut(s) 422
Van91I CCANNNNNTGG 2 cut(s) 126, 551
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.