Rmu_sc0005177.1_g000017

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005177.1
N/A
Physical Location & Seq
Reverse (-)
46544 .. 46974
431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
atgtgtgtcatagttgtggctgcttggaccgccacagtacaccaaagtttcacggccaccatttctctgcttgcattcttcattggataccttatgaccaggatcgcaatggcactaccacatgcctgtgtaggatgttactacgcctgctatgcagagaatccagacaacagattatttgacaacacaataaaggatcgtcttgctctgttgaaatctcgaccagatgtactcgtccccacacctcgagtccctcgccggttcgctgcaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

9.38

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 110, 204
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 2 cut(s) 39, 231
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 98
AlwI GGATC 2 cut(s) 110, 204
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 20, 266
AspS9I GGNCC 1 cut(s) 27
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 7, 253
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 21, 267
BlsI GCNGC 2 cut(s) 22, 268
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 7, 253
BshFI GGCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 221, 236
BsmFI GGGAC 2 cut(s) 221, 236
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 2 cut(s) 102, 196
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 110, 204
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 2 cut(s) 102, 196
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 72, 148
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 2 cut(s) 105, 199
BstMBI GATC 2 cut(s) 102, 196
BstMWI GCNNNNNNNGC 2 cut(s) 29, 152
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 7, 253
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 72, 148
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 38, 230
CviAII CATG 1 cut(s) 122
CviJI RGCY 2 cut(s) 20, 56
CviKI_1 RGCY 2 cut(s) 20, 56
CviQI GTAC 2 cut(s) 38, 230
DpnI GATC 2 cut(s) 104, 198
DpnII GATC 2 cut(s) 102, 196
EaeI YGGCCR 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 125
FaiI YATR 4 cut(s) 11, 95, 123, 153
FaqI GGGAC 2 cut(s) 221, 236
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 21, 267
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 21, 267
GluI GCNGC 2 cut(s) 21, 267
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 125
HinfI GANTC 2 cut(s) 160, 249
HpaII CCGG 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 164, 219
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 74, 155, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 152
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 2 cut(s) 102, 196
LpnPI CCDG 7 cut(s) 85, 112, 139, 160, 177, 237, 272
Lsp1109I GCAGC 2 cut(s) 7, 253
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 104, 198
MboI GATC 2 cut(s) 102, 196
MboII GAAGA 1 cut(s) 70
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 2 cut(s) 255, 264
MslI CAYNNNNRTG 2 cut(s) 14, 126
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 29, 152
NdeII GATC 2 cut(s) 102, 196
NlaIII CATG 1 cut(s) 125
NspI RCATGY 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 246
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 2 cut(s) 22, 268
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspPI GGNCC 1 cut(s) 27
PspXI VCTCGAGB 1 cut(s) 246
RsaI GTAC 2 cut(s) 39, 231
RsaNI GTAC 2 cut(s) 38, 230
RseI CAYNNNNRTG 2 cut(s) 14, 126
SatI GCNGC 2 cut(s) 21, 267
Sau3AI GATC 2 cut(s) 102, 196
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 100
SetI ASST 3 cut(s) 93, 247, 275
Sfr274I CTCGAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 14, 126
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SsiI CCGC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 220, 247
TatI WGTACW 2 cut(s) 37, 229
TfiI GAWTC 1 cut(s) 160
TseI GCWGC 2 cut(s) 20, 266
TspDTI ATGAA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 27
XceI RCATGY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.