Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005178.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11267 .. 12325

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgataccggcgttccaccaaagttttgatgagatgatcaaggactgggagagctcagtgtcaaaagagggttcatctgctgagttggatgtctggccttctcttcaaaatatgacggcagatgcgatctctagaacagcatttggaagtagttataaagaaggaagaaaaatatttgaactcttgagggagcaagcagtacatgtaacaaaagccacacatggcatttacattccaggatggaggtttctaccaactaagatgaacaggaggatgaacgagattaacaaagaaataaaaggtatactcaagggtattattgagaacagagagcaggccatgaaagcaggtgacgccactaaagatgacctattaggggcacttctggagtcaagcttgaaggacattcaggatcataggaagaacaataaaaattttgggatgagtattgacgatgtaattgaggagtgtaagctgttttactttgctgggcaagagaccacttcagtgttgctggtttggacaatggttttgcttagtcaaaatcaggagtggcaagatcgagcaagagaagaggttttgcaagtctttgggagcaacaagccagactttgacggcctaactcacctaaaagttgtggactcactgaagtgggtcgagacagatgcgggtgacgccgcaaactggtgtgaacagagcggcaagggtccgggccaaacagaaggaggagcgccggaaactggagaggttcgctggctgctggaaactggaagagcgccgaaaactggacgatctggaaacgacggcgtcttcggagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

273

Amino Acids

30.57

Weight (kDa)

5.16

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 214	3.4e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	699
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	3 cut(s)	668, 678, 699
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	489, 668
AcyI	GRCGYC	3 cut(s)	354, 675, 807
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	376, 684, 740, 785
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	107, 179, 400
AjnI	CCWGG	1 cut(s)	235
AleI	CACNNNNGTG	2 cut(s)	506, 649
AluBI	AGCT	3 cut(s)	54, 396, 475
AluI	AGCT	3 cut(s)	54, 396, 475
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	491, 653
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	4 cut(s)	95, 336, 616, 712
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	3 cut(s)	514, 546, 794
AspLEI	GCGC	2 cut(s)	733, 778
AspS9I	GGNCC	2 cut(s)	707, 712
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	362, 617, 683
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	382
BaeI	ACNNNNGTAYC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	802
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	744
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	3 cut(s)	132, 631, 820
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	491, 653
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	2 cut(s)	734, 779
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	3 cut(s)	678, 700, 758
BlsI	GCNGC	3 cut(s)	679, 701, 759
Bme1390I	CCNGG	2 cut(s)	237, 711
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	707, 712
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	237, 711
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	112, 655
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	802
BpmI	CTGGAG	2 cut(s)	407, 762
BpuEI	CTTGAG	2 cut(s)	205, 293
BpuMI	CCSGG	1 cut(s)	711
BsaHI	GRCGYC	3 cut(s)	354, 675, 807
BsaI	GGTCTC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 684, 740, 785
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	5 cut(s)	50, 689, 745, 772, 790
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	4 cut(s)	94, 245, 279, 447
BseLI	CCNNNNNNNGG	4 cut(s)	376, 684, 740, 785
BseMII	CTCAG	2 cut(s)	69, 72
BseNI	ACTGG	5 cut(s)	50, 689, 745, 772, 790
BseRI	GAGGAG	2 cut(s)	479, 741
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	744
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	4 cut(s)	97, 338, 618, 714
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	8, 710, 734
BslI	CCNNNNNNNGG	4 cut(s)	376, 684, 740, 785
BsmAI	GTCTC	2 cut(s)	491, 653
BsnI	GGCC	4 cut(s)	97, 338, 618, 714
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	56, 382
Bsp143I	GATC	5 cut(s)	36, 126, 412, 559, 791
BspACI	CCGC	3 cut(s)	668, 678, 699
BspANI	GGCC	4 cut(s)	97, 338, 618, 714
BspCNI	CTCAG	2 cut(s)	68, 73
BspLI	GGNNCC	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	5 cut(s)	50, 689, 745, 772, 790
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	5 cut(s)	36, 126, 412, 559, 791
BssNAI	GTATAC	1 cut(s)	305
BssNI	GRCGYC	3 cut(s)	354, 675, 807
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	3 cut(s)	108, 567, 766
BstACI	GRCGYC	3 cut(s)	354, 675, 807
BstC8I	GCNNGC	3 cut(s)	195, 336, 755
BstDEI	CTNAG	4 cut(s)	55, 81, 258, 536
BstF5I	GGATG	4 cut(s)	94, 245, 279, 447
BstH2I	RGCGCY	2 cut(s)	734, 779
BstHHI	GCGC	2 cut(s)	733, 778
BstKTI	GATC	5 cut(s)	39, 129, 415, 562, 794
BstMAI	GTCTC	2 cut(s)	491, 653
BstMBI	GATC	5 cut(s)	36, 126, 412, 559, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 674
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	235, 709
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	744
BstV2I	GAAGAC	1 cut(s)	802
BstZ17I	GTATAC	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	97, 338, 618, 714
BtsCI	GGATG	4 cut(s)	94, 245, 279, 447
BtsIMutI	CAGTG	3 cut(s)	63, 513, 644
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	3 cut(s)	195, 336, 755
CfoI	GCGC	2 cut(s)	733, 778
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	707, 712
CseI	GACGC	3 cut(s)	362, 683, 796
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	3 cut(s)	203, 221, 340
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	4 cut(s)	55, 81, 258, 536
DpnI	GATC	5 cut(s)	38, 128, 414, 561, 793
DpnII	GATC	5 cut(s)	36, 126, 412, 559, 791
Eam1104I	CTCTTC	3 cut(s)	108, 567, 766
EarI	CTCTTC	3 cut(s)	108, 567, 766
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	489, 668
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	3 cut(s)	206, 224, 343
FaiI	YATR	7 cut(s)	113, 156, 204, 222, 305, 341, 417
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	3 cut(s)	202, 220, 339
FauI	CCCGC	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	678, 700, 758
FokI	GGATG	4 cut(s)	101, 252, 286, 454
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	678, 700, 758
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	732, 777
GluI	GCNGC	3 cut(s)	678, 700, 758
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	2 cut(s)	407, 762
HaeII	RGCGCY	2 cut(s)	734, 779
HaeIII	GGCC	4 cut(s)	97, 338, 618, 714
HapII	CCGG	3 cut(s)	8, 710, 734
HgaI	GACGC	3 cut(s)	362, 683, 796
HhaI	GCGC	2 cut(s)	733, 778
Hin1I	GRCGYC	3 cut(s)	354, 675, 807
Hin1II	CATG	3 cut(s)	206, 224, 343
Hin6I	GCGC	2 cut(s)	731, 776
HinP1I	GCGC	2 cut(s)	731, 776
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	2 cut(s)	389, 641
HpaII	CCGG	3 cut(s)	8, 710, 734
HphI	GGTGA	3 cut(s)	362, 617, 683
Hpy166II	GTNNAC	3 cut(s)	305, 640, 692
Hpy188I	TCNGA	1 cut(s)	815
Hpy188III	TCNNGA	7 cut(s)	132, 184, 386, 410, 548, 658, 795
Hpy8I	GTNNAC	3 cut(s)	305, 640, 692
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	4 cut(s)	108, 155, 394, 716
HpyCH4V	TGCA	1 cut(s)	583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 674
HpyF3I	CTNAG	4 cut(s)	55, 81, 258, 536
Hsp92I	GRCGYC	3 cut(s)	354, 675, 807
Hsp92II	CATG	3 cut(s)	206, 224, 343
HspAI	GCGC	2 cut(s)	731, 776
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	36, 126, 412, 559, 791
LguI	GCTCTTC	1 cut(s)	766
LmnI	GCTCC	3 cut(s)	190, 594, 728
Lsp1109I	GCAGC	1 cut(s)	744
LweI	GCATC	2 cut(s)	112, 655
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	205, 350, 671
MalI	GATC	5 cut(s)	38, 128, 414, 561, 793
MbiI	CCGCTC	1 cut(s)	699
MboI	GATC	5 cut(s)	36, 126, 412, 559, 791
MboII	GAAGA	6 cut(s)	95, 177, 433, 584, 783, 802
MhlI	GDGCHC	2 cut(s)	56, 382
MluCI	AATT	2 cut(s)	433, 459
MlyI	GAGTC	2 cut(s)	398, 635
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	61, 180, 237, 264, 457, 568, 719, 739
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	506, 649
MspI	CCGG	3 cut(s)	8, 710, 734
MspR9I	CCNGG	2 cut(s)	237, 711
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 674
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	5 cut(s)	36, 126, 412, 559, 791
NlaIII	CATG	3 cut(s)	206, 224, 343
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	2 cut(s)	350, 671
NspI	RCATGY	1 cut(s)	206
OliI	CACNNNNGTG	2 cut(s)	506, 649
PaqCI	CACCTGC	1 cut(s)	338
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	679, 701, 759
PleI	GAGTC	2 cut(s)	397, 635
PpsI	GAGTC	2 cut(s)	397, 635
PscI	ACATGT	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	2 cut(s)	707, 712
PsyI	GACNNNGTC	1 cut(s)	806
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	506, 649
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	766
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	678, 700, 758
Sau3AI	GATC	5 cut(s)	36, 126, 412, 559, 791
Sau96I	GGNCC	2 cut(s)	707, 712
SchI	GAGTC	2 cut(s)	398, 635
ScrFI	CCNGG	2 cut(s)	237, 711
SduI	GDGCHC	2 cut(s)	56, 382
SfaNI	GCATC	2 cut(s)	112, 655
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	506, 649
SmlI	CTYRAG	2 cut(s)	184, 308
SmoI	CTYRAG	2 cut(s)	184, 308
Sse9I	AATT	2 cut(s)	433, 459
SsiI	CCGC	3 cut(s)	668, 678, 699
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	235, 709
TaqI	TCGA	2 cut(s)	562, 657
TasI	AATT	2 cut(s)	433, 459
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	2 cut(s)	680, 702
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	63, 513, 651
TseFI	GTSAC	2 cut(s)	350, 671
TseI	GCWGC	1 cut(s)	757
Tsp45I	GTSAC	2 cut(s)	350, 671
TspDTI	ATGAA	4 cut(s)	63, 278, 290, 356
TspRI	CASTG	3 cut(s)	63, 513, 651
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	304
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.