Rmu_sc0005184.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005184.1
N/A
Physical Location & Seq
Forward (+)
21472 .. 23270
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atggaaggactagaggagatgaaggtggaagacttaattgatccaaaggagaaggaatggcaaatgcatcttctggaggagatttttacacctcatgaggtcagttcgatagcgagtataccattgagtttgagatatgcggaggaccggttagtttggcatttctatacaaaggggcaatataatgtcaaaagtagttattttatgtggagaactgccaaggcttcaccgacaattgcttcttcttctagcaccgtggttaggggtgagtttgggaagtattgggcagcaatatggaggctcgggtgccagcaaaaattaagctttttgtttggaggcttctacgtgatgtcatccctactcgaacagctcttgctaggcgtaagaaccttggctgtctggttcgaaaggaataagggcttatacaagggtgcaactttcgacacttattatcttctacagtggacggtgaaatttgtaggggagttacagaagtaccatgtgaagcctagtgtgaaaaggaagcaagtgagggctaaatgggagtgccctccaagtggaaggctcaaaattaacatcgatggtgcttttagttctatgaatgggtgtggagcattggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

207

Amino Acids

23.84

Weight (kDa)

9.25

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 118
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 473
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 2 cut(s) 261, 557
AgeI ACCGGT 1 cut(s) 147
AluBI AGCT 2 cut(s) 324, 370
AluI AGCT 2 cut(s) 324, 370
AlwI GGATC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 473
AsiGI ACCGGT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 219, 278, 481
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 551
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BanI GGYRCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 575
BfaI CTAG 4 cut(s) 11, 249, 377, 510
BfmI CTRYAG 1 cut(s) 458
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 308
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 346
BsaJI CCNNGG 3 cut(s) 219, 255, 390
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 557
Bse118I RCCGGY 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 3 cut(s) 219, 255, 390
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 261, 557
BseRI GAGGAG 2 cut(s) 29, 92
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 306
BshTI ACCGGT 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 261, 557
BsoBI CYCGRG 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 579
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 308
BspPI GGATC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 219, 255, 390
BssMI GATC 1 cut(s) 40
BssNAI GTATAC 1 cut(s) 119
BssT1I CCWWGG 2 cut(s) 219, 390
Bst1107I GTATAC 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 256, 462, 469
BstBAI YACGTR 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 458
BstSLI GKGCMC 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 36
BstZ17I GTATAC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 311
CciI TCATGA 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 579
Csp6I GTAC 1 cut(s) 496
CspAI ACCGGT 1 cut(s) 147
CviAII CATG 2 cut(s) 95, 500
CviQI GTAC 1 cut(s) 496
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 219, 390
Eco47I GGWCC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 219, 390
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 219, 390
FaeI CATG 2 cut(s) 98, 503
FatI CATG 2 cut(s) 94, 499
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 4 cut(s) 11, 249, 377, 510
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 95
HapII CCGG 1 cut(s) 148
Hin1II CATG 2 cut(s) 98, 503
HindIII AAGCTT 1 cut(s) 322
HpaII CCGG 1 cut(s) 148
HphI GGTGA 3 cut(s) 219, 278, 481
Hpy166II GTNNAC 2 cut(s) 119, 465
Hpy188III TCNNGA 2 cut(s) 74, 95
Hpy8I GTNNAC 2 cut(s) 119, 465
HpyAV CCTTC 3 cut(s) 16, 46, 555
HpyCH4III ACNGT 3 cut(s) 256, 462, 469
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 67, 434
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 98, 503
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 611
LpnPI CCDG 4 cut(s) 59, 161, 323, 385
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 11, 249, 377, 510
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 486
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 5 cut(s) 41, 62, 234, 237, 446
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 5 cut(s) 36, 234, 317, 473, 570
MnlI CCTC 9 cut(s) 7, 70, 91, 102, 136, 291, 329, 525, 561
Mph1103I ATGCAT 1 cut(s) 69
MseI TTAA 3 cut(s) 35, 320, 573
MspI CCGG 1 cut(s) 148
MunI CAATTG 1 cut(s) 234
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 98, 503
NlaIV GGNNCC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 69
NspV TTCGAA 1 cut(s) 405
PagI TCATGA 1 cut(s) 94
PinAI ACCGGT 1 cut(s) 147
PkrI GCNGC 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SaqAI TTAA 3 cut(s) 35, 320, 573
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 551
SetI ASST 7 cut(s) 27, 94, 102, 326, 348, 372, 392
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 458
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 1 cut(s) 145
Sse9I AATT 5 cut(s) 36, 234, 317, 473, 570
SsiI CCGC 1 cut(s) 140
SspMI CTAG 4 cut(s) 11, 249, 377, 510
StyI CCWWGG 2 cut(s) 219, 390
TaaI ACNGT 3 cut(s) 256, 462, 469
TaiI ACGT 1 cut(s) 348
TaqI TCGA 5 cut(s) 107, 363, 405, 441, 579
TasI AATT 5 cut(s) 36, 234, 317, 473, 570
Tru1I TTAA 3 cut(s) 35, 320, 573
Tru9I TTAA 3 cut(s) 35, 320, 573
TscAI CASTG 1 cut(s) 467
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 35, 614
TspRI CASTG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 4 cut(s) 11, 249, 377, 510
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.