Rmu_sc0005184.1_g000014

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005184.1
N/A
Physical Location & Seq
Forward (+)
31591 .. 31977
387 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
atgctaactgttgagcaagctcaagctgtggaagcaaataaagcagccttagaggcaaataaggcgaaaaccatcatcaaaataactcgtcatatggatgattttctccagtatgagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgttcgttcctccctacttcctgacctagaagtgagatggcatagcctccgcttctgtggtttcaagtcagtttttaactacaactcagaagcatttcgcattaaatccttaatggaattatgtggtaaagatatcacaaatgcgatgttgattgagaagactctctctaccttccctatctctgcattgttggttgctaggaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.82

Weight (kDa)

6.73

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AclI AACGTT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 20, 26
AluI AGCT 2 cut(s) 20, 26
Alw26I GTCTC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 138, 341
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 80, 207
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 203, 375
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 138, 341
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 157
BspACI CCGC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 49, 262
BstF5I GGATG 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 2 cut(s) 138, 341
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 18
CviJI RGCY 5 cut(s) 20, 26, 47, 145, 222
CviKI_1 RGCY 5 cut(s) 20, 26, 47, 145, 222
DdeI CTNAG 2 cut(s) 49, 262
Eco31I GGTCTC 1 cut(s) 157
Eco32I GATATC 1 cut(s) 310
EcoRV GATATC 1 cut(s) 310
FaiI YATR 6 cut(s) 93, 95, 114, 122, 219, 298
FauNDI CATATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 203, 375
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 92
HinfI GANTC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 135, 358
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
HpyF3I CTNAG 2 cut(s) 49, 262
HpySE526I ACGT 1 cut(s) 177
LpnPI CCDG 3 cut(s) 122, 151, 210
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 2 cut(s) 203, 375
MaeII ACGT 1 cut(s) 177
MboII GAAGA 4 cut(s) 140, 143, 173, 346
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 3 cut(s) 46, 196, 233
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 3 cut(s) 252, 279, 287
MslI CAYNNNNRTG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
NdeI CATATG 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 252, 279, 287
SatI GCNGC 1 cut(s) 45
SchI GAGTC 1 cut(s) 331
SetI ASST 5 cut(s) 22, 28, 180, 204, 350
SgeI CNNG 9 cut(s) 29, 35, 99, 121, 150, 170, 209, 215, 253
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 226
SspMI CTAG 2 cut(s) 203, 375
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 293
Tru1I TTAA 3 cut(s) 252, 279, 287
Tru9I TTAA 3 cut(s) 252, 279, 287
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 137, 141
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 2 cut(s) 203, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.