Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005187.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1447

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 964 bp

atggagagagctcagttcttcctcttgtgcataacattgttgctttgcatggccagagcacaaaccaatttgacgacagaccagtctgctcttcttgctctcaaagctaatgtcactagtgaccctcaagacttgttgtcgaactggtctaccaatacctccgtttgcaactgggttggggttacttgtggtcctgtccatcttagagtcgctgccttgaatctctcttattttgggctcacaggtagaattcctccggagctcggaaacctttcatttcttgttgtgctacgcttgagaaacaacagttttaatggcactttgcctgtggaattggctggtttgcgccgattgaagttggttaacttcaaatacaataactttatgggagagattccatcatggtttgggtccttatccagtcttaaagccttgaatttgtatgggaatcggttcacaggatccatacctgctgctatcttcaacttatctgctctgcaagtatttgatctgcgaaataaccagctatcaggtagcataccgagagaaatcgggaacttaacaatgctgaagcatttataccttgacaataacaatttccaagaaattccggatgagatcggcagtttacatgagctggatttgctgtctatgcaatacaatggcctaaaagggcgtgttcctttggttttcttcaacatgtcttctttgactattttgggcctttcaggaaacagtttcagtggtcgtcttcctgacaatatatgtcagaatcttcctagtattcaaaggttgtacttttctatcaaccagtttgatggtccacttccatcccaattatggcaatgcaaacagcttcttgtattgtcattatctgttaacaatttcagtggaagtatacccagaaatattggcaacttgactaagttacagaagatttatctagacttcaacaatttgacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

321

Amino Acids

35.74

Weight (kDa)

9.08

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	478
AccI	GTMKAC	2 cut(s)	149, 898
AccIII	TCCGGA	2 cut(s)	256, 610
AclWI	GGATC	2 cut(s)	456, 469
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	249, 436, 606
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	797
AfiI	CCNNNNNNNGG	2 cut(s)	263, 840
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	8 cut(s)	220, 355, 370, 436, 484, 697, 788, 952
AhdI	GACNNNNNGTC	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	116
AluBI	AGCT	6 cut(s)	11, 107, 262, 526, 637, 856
AluI	AGCT	6 cut(s)	11, 107, 262, 526, 637, 856
Alw21I	GWGCWC	3 cut(s)	13, 61, 264
AlwI	GGATC	2 cut(s)	456, 469
Aor13HI	TCCGGA	2 cut(s)	256, 610
AoxI	GGCC	3 cut(s)	51, 664, 721
ApeKI	GCWGC	2 cut(s)	212, 473
ApoI	RAATTY	3 cut(s)	249, 436, 606
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp700I	GAANNNNTTC	2 cut(s)	271, 452
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	191, 411, 721, 821
AvaII	GGWCC	3 cut(s)	191, 411, 821
BalI	TGGCCA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	461
BanII	GRGCYC	3 cut(s)	13, 240, 264
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BbsI	GAAGAC	2 cut(s)	696, 743
Bbv12I	GWGCWC	3 cut(s)	13, 61, 264
BbvI	GCAGC	2 cut(s)	199, 460
BccI	CCATC	4 cut(s)	207, 406, 812, 838
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 780, 944
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	2 cut(s)	213, 474
BlsI	GCNGC	2 cut(s)	214, 475
Bme18I	GGWCC	3 cut(s)	191, 411, 821
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	4 cut(s)	191, 411, 721, 821
BmiI	GGNNCC	2 cut(s)	412, 463
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	2 cut(s)	696, 743
BpuEI	CTTGAG	2 cut(s)	111, 316
BsaWI	WCCGGW	2 cut(s)	256, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 840
Bse1I	ACTGG	5 cut(s)	82, 149, 176, 420, 811
Bse3DI	GCAATG	1 cut(s)	851
BseAI	TCCGGA	2 cut(s)	256, 610
BseGI	GGATG	2 cut(s)	619, 830
BseLI	CCNNNNNNNGG	2 cut(s)	263, 840
BseMI	GCAATG	1 cut(s)	851
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	5 cut(s)	82, 149, 176, 420, 811
BseXI	GCAGC	2 cut(s)	199, 460
BshFI	GGCC	3 cut(s)	53, 666, 723
BsiHKAI	GWGCWC	3 cut(s)	13, 61, 264
BsiSI	CCGG	2 cut(s)	257, 611
BslI	CCNNNNNNNGG	2 cut(s)	263, 840
BsnI	GGCC	3 cut(s)	53, 666, 723
Bsp1286I	GDGCHC	4 cut(s)	13, 61, 240, 264
Bsp13I	TCCGGA	2 cut(s)	256, 610
Bsp143I	GATC	3 cut(s)	461, 508, 618
BspANI	GGCC	3 cut(s)	53, 666, 723
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	2 cut(s)	256, 610
BspLI	GGNNCC	2 cut(s)	412, 463
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	2 cut(s)	456, 469
BspQI	GCTCTTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	851
BsrI	ACTGG	5 cut(s)	82, 149, 176, 420, 811
BssMI	GATC	3 cut(s)	461, 508, 618
BssNAI	GTATAC	1 cut(s)	899
Bst1107I	GTATAC	1 cut(s)	899
Bst4CI	ACNGT	2 cut(s)	308, 737
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	12, 203, 924
BstF5I	GGATG	2 cut(s)	619, 830
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	464, 511, 621
BstMBI	GATC	3 cut(s)	461, 508, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 643, 652
BstNSI	RCATGY	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	199, 460
BstV2I	GAAGAC	2 cut(s)	696, 743
BstX2I	RGATCY	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	899
BsuRI	GGCC	3 cut(s)	53, 666, 723
BtsCI	GGATG	2 cut(s)	619, 830
BtsIMutI	CAGTG	2 cut(s)	748, 895
BveI	ACCTGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	4 cut(s)	191, 411, 721, 821
Csp6I	GTAC	1 cut(s)	796
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	4 cut(s)	49, 402, 632, 700
CviQI	GTAC	1 cut(s)	796
DdeI	CTNAG	3 cut(s)	12, 203, 924
DpnI	GATC	3 cut(s)	463, 510, 620
DpnII	GATC	3 cut(s)	461, 508, 618
DrdI	GACNNNNNNGTC	1 cut(s)	82
DriI	GACNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	11, 262
Eco24I	GRGCYC	3 cut(s)	13, 240, 264
Eco47I	GGWCC	3 cut(s)	191, 411, 821
Eco53kI	GAGCTC	2 cut(s)	11, 262
Eco57I	CTGAAG	1 cut(s)	590
EcoICRI	GAGCTC	2 cut(s)	11, 262
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	249
EcoT38I	GRGCYC	3 cut(s)	13, 240, 264
FaeI	CATG	4 cut(s)	52, 405, 635, 703
FatI	CATG	4 cut(s)	48, 401, 631, 699
FblI	GTMKAC	2 cut(s)	149, 898
Fnu4HI	GCNGC	2 cut(s)	213, 474
FokI	GGATG	2 cut(s)	626, 817
FriOI	GRGCYC	3 cut(s)	13, 240, 264
Fsp4HI	GCNGC	2 cut(s)	213, 474
FspBI	CTAG	3 cut(s)	117, 780, 944
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	213, 474
HaeIII	GGCC	3 cut(s)	53, 666, 723
HapII	CCGG	2 cut(s)	257, 611
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	52, 405, 635, 703
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	364, 880
HindII	GTYRAC	2 cut(s)	364, 880
HinfI	GANTC	5 cut(s)	207, 220, 394, 448, 772
HpaI	GTTAAC	2 cut(s)	364, 880
HpaII	CCGG	2 cut(s)	257, 611
Hpy166II	GTNNAC	7 cut(s)	150, 364, 456, 629, 824, 880, 899
Hpy188I	TCNGA	2 cut(s)	266, 771
Hpy188III	TCNNGA	7 cut(s)	128, 257, 553, 611, 729, 755, 944
Hpy8I	GTNNAC	7 cut(s)	150, 364, 456, 629, 824, 880, 899
HpyCH4III	ACNGT	2 cut(s)	308, 737
HpyCH4V	TGCA	6 cut(s)	30, 48, 168, 499, 655, 849
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 643, 652
HpyF3I	CTNAG	3 cut(s)	12, 203, 924
Hsp92II	CATG	4 cut(s)	52, 405, 635, 703
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	2 cut(s)	256, 610
KspAI	GTTAAC	2 cut(s)	364, 880
Kzo9I	GATC	3 cut(s)	461, 508, 618
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	199, 460
MaeI	CTAG	3 cut(s)	117, 780, 944
MaeIII	GTNAC	4 cut(s)	112, 119, 181, 927
MalI	GATC	3 cut(s)	463, 510, 620
MboI	GATC	3 cut(s)	461, 508, 618
MboII	GAAGA	8 cut(s)	10, 83, 472, 685, 696, 743, 767, 946
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	4 cut(s)	13, 61, 240, 264
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	9 cut(s)	67, 249, 332, 436, 595, 606, 836, 883, 955
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	32, 135, 169, 264
Mox20I	TGGCCA	1 cut(s)	53
MroI	TCCGGA	2 cut(s)	256, 610
MroXI	GAANNNNTTC	2 cut(s)	271, 452
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	5 cut(s)	312, 363, 426, 560, 879
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	257, 611
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 643, 652
NdeII	GATC	3 cut(s)	461, 508, 618
NlaIII	CATG	4 cut(s)	52, 405, 635, 703
NlaIV	GGNNCC	2 cut(s)	412, 463
NmuCI	GTSAC	2 cut(s)	112, 119
NspI	RCATGY	1 cut(s)	703
PciI	ACATGT	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	271, 452
PfeI	GAWTC	4 cut(s)	220, 394, 448, 772
PkrI	GCNGC	2 cut(s)	214, 475
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	411
PscI	ACATGT	1 cut(s)	699
Psp124BI	GAGCTC	2 cut(s)	13, 264
Psp5II	RGGWCCY	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	412, 463
PspPI	GGNCC	4 cut(s)	191, 411, 721, 821
PspPPI	RGGWCCY	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	797
RsaNI	GTAC	1 cut(s)	796
SacI	GAGCTC	2 cut(s)	13, 264
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	5 cut(s)	312, 363, 426, 560, 879
SatI	GCNGC	2 cut(s)	213, 474
Sau3AI	GATC	3 cut(s)	461, 508, 618
Sau96I	GGNCC	4 cut(s)	191, 411, 721, 821
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	4 cut(s)	13, 61, 240, 264
SinI	GGWCC	3 cut(s)	191, 411, 821
SmlI	CTYRAG	2 cut(s)	126, 295
SmoI	CTYRAG	2 cut(s)	126, 295
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	9 cut(s)	67, 249, 332, 436, 595, 606, 836, 883, 955
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	3 cut(s)	117, 780, 944
SstI	GAGCTC	2 cut(s)	13, 264
TaaI	ACNGT	2 cut(s)	308, 737
TaqI	TCGA	1 cut(s)	140
TasI	AATT	9 cut(s)	67, 249, 332, 436, 595, 606, 836, 883, 955
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	4 cut(s)	220, 394, 448, 772
Tru1I	TTAA	5 cut(s)	312, 363, 426, 560, 879
Tru9I	TTAA	5 cut(s)	312, 363, 426, 560, 879
TscAI	CASTG	2 cut(s)	748, 895
TseFI	GTSAC	2 cut(s)	112, 119
TseI	GCWGC	2 cut(s)	212, 473
Tsp45I	GTSAC	2 cut(s)	112, 119
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	2 cut(s)	748, 895
VpaK11BI	GGWCC	3 cut(s)	191, 411, 821
XapI	RAATTY	3 cut(s)	249, 436, 606
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
XmiI	GTMKAC	2 cut(s)	149, 898
XmnI	GAANNNNTTC	2 cut(s)	271, 452
XspI	CTAG	3 cut(s)	117, 780, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.