Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005198.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

42406 .. 45619

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgagtgctggtggtcaggttgagcctccagggatgcacatgatatatcttccatattccgatgacattagacacactgaagagcttcttatgggttcagatgctacagcgtctcatgcaagtgatgatcaaattagcaaggctactgctttaatcaaccgtctagacttgaaagatttctcagttttccaattttctaaccctgccctgcagagacactatgcagtattgcaggccctggctctggatgaggatgatataccggaaattaaagatgaaactttacctgatgaggaaggcatgtctagaccaggagttgttagaacaatagaagaattcaagcattccgtttatggagaaaattatgatgaggaaagtgaagttggaaatgccaaagtaagtgagaccaccaaaaagcgaaaagcagctgctgaaaatgcagttaaagagattgctaagcatgactgggctgaccttgcagataacggaaagttaaagaatttgactgtcatggacttgaagtgctatttgacagcaaacaatcttccagttgctgggaagaaggaagcattgatcagtcgaatattgactcacatggggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

201

Amino Acids

22.26

Weight (kDa)

5.0

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_C	PF03730	60 - 141	1e-20	Ku70/Ku80 C-terminal arm
SAP	PF02037	165 - 198	1.6e-06	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	335, 499
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	244, 554
AgsI	TTSAA	3 cut(s)	172, 340, 520
AjnI	CCWGG	3 cut(s)	28, 237, 310
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	2 cut(s)	85, 428
AluI	AGCT	2 cut(s)	85, 428
Alw26I	GTCTC	3 cut(s)	117, 208, 398
AlwNI	CAGNNNCTG	3 cut(s)	238, 431, 554
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	425, 428
ApoI	RAATTY	2 cut(s)	335, 499
Asp700I	GAANNNNTTC	2 cut(s)	84, 176
AspS9I	GGNCC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	415, 437
BciT130I	CCWGG	3 cut(s)	30, 239, 312
BclI	TGATCA	2 cut(s)	127, 573
BcoDI	GTCTC	3 cut(s)	117, 208, 398
BfaI	CTAG	2 cut(s)	164, 306
BfmI	CTRYAG	2 cut(s)	105, 209
BisI	GCNGC	2 cut(s)	426, 429
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	2 cut(s)	427, 430
Bme1390I	CCNGG	3 cut(s)	30, 239, 312
BmgT120I	GGNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	30, 239, 312
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	24, 91
BmuI	ACTGGG	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	29, 237
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 554
Bse1I	ACTGG	2 cut(s)	470, 548
BseBI	CCWGG	3 cut(s)	30, 239, 312
BseDI	CCNNGG	2 cut(s)	29, 237
BseGI	GGATG	3 cut(s)	39, 253, 259
BseLI	CCNNNNNNNGG	2 cut(s)	244, 554
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	470, 548
BseXI	GCAGC	2 cut(s)	415, 437
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	244, 554
BsmAI	GTCTC	3 cut(s)	117, 208, 398
BsmBI	CGTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	127, 573
Bsp1720I	GCTNAGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	470, 548
BssECI	CCNNGG	2 cut(s)	29, 237
BssMI	GATC	2 cut(s)	127, 573
Bst2UI	CCWGG	3 cut(s)	30, 239, 312
Bst4CI	ACNGT	2 cut(s)	161, 508
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	181, 456
BstF5I	GGATG	3 cut(s)	39, 253, 259
BstKTI	GATC	2 cut(s)	130, 576
BstMAI	GTCTC	3 cut(s)	117, 208, 398
BstMBI	GATC	2 cut(s)	127, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 437, 476
BstNI	CCWGG	3 cut(s)	30, 239, 312
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	3 cut(s)	28, 237, 310
BstSFI	CTRYAG	2 cut(s)	105, 209
BstV1I	GCAGC	2 cut(s)	415, 437
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	39, 253, 259
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	3 cut(s)	238, 431, 554
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	99
CviAII	CATG	6 cut(s)	40, 116, 301, 461, 511, 595
CviJI	RGCY	7 cut(s)	25, 85, 143, 236, 242, 428, 470
CviKI_1	RGCY	7 cut(s)	25, 85, 143, 236, 242, 428, 470
DdeI	CTNAG	2 cut(s)	181, 456
DpnI	GATC	2 cut(s)	129, 575
DpnII	GATC	2 cut(s)	127, 573
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	28, 237, 310
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	6 cut(s)	43, 119, 304, 464, 514, 598
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	6 cut(s)	39, 115, 300, 460, 510, 594
FbaI	TGATCA	2 cut(s)	127, 573
Fnu4HI	GCNGC	2 cut(s)	426, 429
FokI	GGATG	3 cut(s)	46, 260, 266
Fsp4HI	GCNGC	2 cut(s)	426, 429
FspBI	CTAG	2 cut(s)	164, 306
GluI	GCNGC	2 cut(s)	426, 429
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	43, 119, 304, 464, 514, 598
HinfI	GANTC	1 cut(s)	589
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	61, 100
Hpy188III	TCNNGA	3 cut(s)	164, 245, 306
HpyAV	CCTTC	2 cut(s)	290, 556
HpyCH4III	ACNGT	2 cut(s)	161, 508
HpyCH4V	TGCA	7 cut(s)	37, 119, 211, 224, 232, 440, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 437, 476
HpyF3I	CTNAG	2 cut(s)	181, 456
Hsp92II	CATG	6 cut(s)	43, 119, 304, 464, 514, 598
Ksp22I	TGATCA	2 cut(s)	127, 573
Kzo9I	GATC	2 cut(s)	127, 573
LguI	GCTCTTC	1 cut(s)	75
Lsp1109I	GCAGC	2 cut(s)	415, 437
LweI	GCATC	2 cut(s)	24, 91
MaeI	CTAG	2 cut(s)	164, 306
MalI	GATC	2 cut(s)	129, 575
MboI	GATC	2 cut(s)	127, 573
MboII	GAAGA	5 cut(s)	41, 92, 344, 536, 571
MluCI	AATT	6 cut(s)	132, 191, 267, 335, 361, 499
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	36, 244, 286, 364
MroXI	GAANNNNTTC	2 cut(s)	84, 176
MseI	TTAA	4 cut(s)	152, 270, 444, 494
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	30, 239, 312
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	30, 239, 312
MwoI	GCNNNNNNNGC	3 cut(s)	116, 437, 476
NdeII	GATC	2 cut(s)	127, 573
NlaIII	CATG	6 cut(s)	43, 119, 304, 464, 514, 598
NspI	RCATGY	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	2 cut(s)	84, 176
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	427, 430
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
Psp6I	CCWGG	3 cut(s)	28, 237, 310
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	3 cut(s)	28, 237, 310
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	3 cut(s)	238, 431, 554
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	4 cut(s)	152, 270, 444, 494
SatI	GCNGC	2 cut(s)	426, 429
Sau3AI	GATC	2 cut(s)	127, 573
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	3 cut(s)	30, 239, 312
SetI	ASST	5 cut(s)	21, 87, 289, 430, 477
SfaNI	GCATC	2 cut(s)	24, 91
SfcI	CTRYAG	2 cut(s)	105, 209
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	6 cut(s)	132, 191, 267, 335, 361, 499
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	2 cut(s)	164, 306
StyD4I	CCNGG	3 cut(s)	28, 237, 310
TaaI	ACNGT	2 cut(s)	161, 508
TaqI	TCGA	1 cut(s)	580
TasI	AATT	6 cut(s)	132, 191, 267, 335, 361, 499
Tru1I	TTAA	4 cut(s)	152, 270, 444, 494
Tru9I	TTAA	4 cut(s)	152, 270, 444, 494
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	425, 428
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	2 cut(s)	337, 501
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	335, 499
XbaI	TCTAGA	2 cut(s)	163, 305
XceI	RCATGY	1 cut(s)	304
XmnI	GAANNNNTTC	2 cut(s)	84, 176
XspI	CTAG	2 cut(s)	164, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.