Rmu_sc0005214.1_g000002

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005214.1
N/A
Physical Location & Seq
Forward (+)
1875 .. 2296
422 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atgggcggaccatggagttttaaccggactctcttggttttgcagccctatgatagtattgcaccactgcgatcggtacctatgcttgatttattcttttgggttcgtataaccgatatgcccgcagcgtttgaacagcggaaaaccattgcaaatgtggctacggtagcgggaaagtatctggacattgatgggaagctatttgatgccacaggggagattagagttcgggaggtgcactttctgtacgaaaatatggtgggcatgtgtgatatatgtgtaactgtgtttgtgtctttcatgagaaaggcccatgaaaccctaacatggtgccctctgctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

114

Amino Acids

13.05

Weight (kDa)

6.06

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 76, 330
AciI CCGC 4 cut(s) 6, 123, 139, 170
AfaI GTAC 2 cut(s) 78, 248
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 236
AoxI GGCC 1 cut(s) 309
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 43, 125
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 8, 310
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 2 cut(s) 240, 335
BanI GGYRCC 2 cut(s) 76, 330
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 55, 137
BccI CCATC 1 cut(s) 185
BisI GCNGC 2 cut(s) 44, 126
BlsI GCNGC 2 cut(s) 45, 127
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 310
BmiI GGNNCC 2 cut(s) 78, 332
BmsI GCATC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 147
BseSI GKGCMC 2 cut(s) 240, 335
BseXI GCAGC 2 cut(s) 55, 137
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 2 cut(s) 76, 330
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 327
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 240, 335
Bsp143I GATC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 4 cut(s) 6, 123, 139, 170
BspANI GGCC 1 cut(s) 311
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 78, 332
BspT107I GGYRCC 2 cut(s) 76, 330
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 166, 286
BstC8I GCNNGC 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 11
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 158, 167
BstNSI RCATGY 1 cut(s) 268
BstSLI GKGCMC 2 cut(s) 240, 335
BstV1I GCAGC 2 cut(s) 55, 137
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 8, 310
Csp6I GTAC 2 cut(s) 77, 247
CviAII CATG 5 cut(s) 12, 265, 301, 314, 327
CviJI RGCY 4 cut(s) 46, 161, 199, 311
CviKI_1 RGCY 4 cut(s) 46, 161, 199, 311
CviQI GTAC 2 cut(s) 77, 247
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 5 cut(s) 15, 268, 304, 317, 330
FatI CATG 5 cut(s) 11, 264, 300, 313, 326
FauI CCCGC 2 cut(s) 130, 163
Fnu4HI GCNGC 2 cut(s) 44, 126
Fsp4HI GCNGC 2 cut(s) 44, 126
GluI GCNGC 2 cut(s) 44, 126
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 25
Hin1II CATG 5 cut(s) 15, 268, 304, 317, 330
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 182, 230, 301
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 166, 286
HpyCH4V TGCA 4 cut(s) 43, 62, 152, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 167
Hsp92II CATG 5 cut(s) 15, 268, 304, 317, 330
KpnI GGTACC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 38, 167, 198
Lsp1109I GCAGC 2 cut(s) 55, 137
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 240, 335
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 2 cut(s) 226, 345
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 158, 167
NcoI CCATGG 1 cut(s) 11
NdeII GATC 1 cut(s) 71
NlaIII CATG 5 cut(s) 15, 268, 304, 317, 330
NlaIV GGNNCC 2 cut(s) 78, 332
NspI RCATGY 1 cut(s) 268
PagI TCATGA 1 cut(s) 300
PkrI GCNGC 2 cut(s) 45, 127
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 78, 332
PspPI GGNCC 2 cut(s) 8, 310
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 2 cut(s) 78, 248
RsaNI GTAC 2 cut(s) 77, 247
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 44, 126
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 2 cut(s) 8, 310
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 240, 335
SetI ASST 3 cut(s) 82, 201, 237
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 8
SsiI CCGC 4 cut(s) 6, 123, 139, 170
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 166, 286
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 43, 125
TspDTI ATGAA 2 cut(s) 289, 330
TspRI CASTG 1 cut(s) 72
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 8
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.