Rmu_sc0005220.1_g000002

Belongs to the universal ribosomal protein uS15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
N/A
Physical Location & Seq
Forward (+)
6931 .. 11124
4194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
atggaccatagagtcacagataaaggcgctttagcgagaccactttattgcaggggatggggtagaatgaaaagccagaaaggtaaaagagaaatggcacaaacatggatgacagtacttggatttcatggtgtctctttcaaatggggaagaacagaaaagagtgagttggttgaggagaacatttgcaagtttgccaagaagggcttgacaccatcacaaattggtgtcatccttcgtgattctcatggaattgctcaggtgaagagtgttactggcagcaagatattgcgtattcttaaggcacacggtcttgcacccgaaattccagaggacttgtaccacctcatcaagaaggcagtctccatcaggaagcatttggagaggaacaggaaggataaggactccaaattcaggctgatcctggttgagagcagaatccatcgccttgcccgatattacaagaagacaaagaagcttccaccagtatggaaatatgaatctaccaccgccagcactcttgtggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S13_N Ribosomal_S15

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

10.31

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13_N PF08069 49 - 85 6.9e-13 Ribosomal S13/S15 N-terminal domain
Ribosomal_S15 PF00312 99 - 171 2.6e-15 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AciI CCGC 1 cut(s) 510
AclWI GGATC 1 cut(s) 415
AcsI RAATTY 2 cut(s) 324, 410
AfaI GTAC 2 cut(s) 117, 341
AfiI CCNNNNNNNGG 1 cut(s) 414
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 423
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 3 cut(s) 31, 139, 367
AlwI GGATC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 2 cut(s) 324, 410
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 291
BccI CCATC 4 cut(s) 51, 223, 374, 450
BciT130I CCWGG 1 cut(s) 425
BcoDI GTCTC 3 cut(s) 31, 139, 367
BfoI RGCGCY 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 2 cut(s) 280, 485
BseBI CCWGG 1 cut(s) 425
BseGI GGATG 3 cut(s) 62, 114, 231
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 280, 485
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 3 cut(s) 31, 139, 367
Bso31I GGTCTC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 420
BspACI CCGC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 31
BsrI ACTGG 2 cut(s) 280, 485
BssMI GATC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 115, 311
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 258, 528
BstF5I GGATG 3 cut(s) 62, 114, 231
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 3 cut(s) 31, 139, 367
BstMBI GATC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 3 cut(s) 62, 114, 231
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 116, 340
CviAII CATG 3 cut(s) 105, 128, 248
CviJI RGCY 5 cut(s) 75, 207, 418, 478, 527
CviKI_1 RGCY 5 cut(s) 75, 207, 418, 478, 527
CviQI GTAC 2 cut(s) 116, 340
DdeI CTNAG 2 cut(s) 258, 528
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 423
FaeI CATG 3 cut(s) 108, 131, 251
FaiI YATR 6 cut(s) 9, 106, 129, 249, 490, 498
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 104, 127, 247
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 3 cut(s) 69, 121, 218
Fsp4HI GCNGC 1 cut(s) 280
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 30
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 108, 131, 251
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 5 cut(s) 12, 242, 404, 438, 500
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 4 cut(s) 239, 329, 352, 370
HpyAV CCTTC 4 cut(s) 196, 245, 349, 388
HpyCH4III ACNGT 2 cut(s) 115, 311
HpyCH4V TGCA 3 cut(s) 51, 189, 317
HpyF3I CTNAG 2 cut(s) 258, 528
Hsp92II CATG 3 cut(s) 108, 131, 251
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 420
Lsp1109I GCAGC 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 13, 271
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 3 cut(s) 162, 277, 478
MluCI AATT 4 cut(s) 222, 252, 324, 410
MlyI GAGTC 2 cut(s) 21, 398
MnlI CCTC 4 cut(s) 169, 325, 356, 378
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 3 cut(s) 103, 487, 521
MspCI CTTAAG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 425
NdeII GATC 1 cut(s) 420
NlaIII CATG 3 cut(s) 108, 131, 251
NmuCI GTSAC 1 cut(s) 13
OliI CACNNNNGTG 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 3 cut(s) 242, 438, 500
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 2 cut(s) 20, 398
PpsI GAGTC 2 cut(s) 20, 398
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 117, 341
RsaNI GTAC 2 cut(s) 116, 340
RseI CAYNNNNRTG 3 cut(s) 103, 487, 521
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 2 cut(s) 21, 398
ScrFI CCNGG 1 cut(s) 425
SetI ASST 4 cut(s) 85, 264, 348, 480
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 3 cut(s) 103, 487, 521
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 222, 252, 324, 410
SsiI CCGC 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 115, 311
TasI AATT 4 cut(s) 222, 252, 324, 410
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 3 cut(s) 242, 438, 500
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 83, 116, 513
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 324, 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.