Rmu_sc0005220.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
N/A
Physical Location & Seq
Reverse (-)
109059 .. 109643
585 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atgtctgatccaactcgacctgaatttgacgtcttggactcagaaggacttgacctatgctgggagtaccttcagttgaagacacccaaagaactgtgggatgcccttaagggaagttttggaaacattcatgacactttgctcccagaactggccattctgtggaatggaatccgcttgcttgattacaaaagggtcaatgacttcaacaagaacatgttgcgcttaaaggcacgtctcaatttctgtgaaagggaaatcacagaagatgatatgatctacaagactctttctacttttcctacttcagcgcttatactagcgaaccagtataggctggagtatgaccacaaaagaatcacaaccttcaataagttgatcagcctactgcaagtggctgagaggcataatgagattctcttgaacaacaatgtcaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

146

Amino Acids

17.26

Weight (kDa)

5.63

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 1 cut(s) 175
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 56, 291
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 68
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 61, 151, 162
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 4 cut(s) 79, 208, 370, 424
AjiI CACGTC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 2
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 23
AspLEI GCGC 2 cut(s) 225, 313
BalI TGGCCA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 86
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 314
BfrI CTTAAG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 236
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 151, 162
Bse1I ACTGG 2 cut(s) 156, 328
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 3 cut(s) 61, 151, 162
BseMII CTCAG 2 cut(s) 54, 390
BseNI ACTGG 2 cut(s) 156, 328
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 61, 151, 162
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 7, 276, 378
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 53, 391
BspHI TCATGA 1 cut(s) 130
BspPI GGATC 1 cut(s) 2
BspTI CTTAAG 1 cut(s) 107
BsrI ACTGG 2 cut(s) 156, 328
BssMI GATC 3 cut(s) 7, 276, 378
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 30
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 40, 399
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 2 cut(s) 225, 313
BstKTI GATC 3 cut(s) 10, 279, 381
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 7, 276, 378
BstNSI RCATGY 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 155
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 179
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 225, 313
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 131, 217
CviJI RGCY 4 cut(s) 155, 337, 384, 398
CviKI_1 RGCY 4 cut(s) 155, 337, 384, 398
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 40, 399
DpnI GATC 3 cut(s) 9, 278, 380
DpnII GATC 3 cut(s) 7, 276, 378
EaeI YGGCCR 1 cut(s) 153
Eco47III AGCGCT 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 56, 291
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 2 cut(s) 134, 220
FaiI YATR 8 cut(s) 58, 132, 218, 275, 317, 333, 345, 408
FatI CATG 2 cut(s) 130, 216
FbaI TGATCA 1 cut(s) 378
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 320
GlaI GCGC 2 cut(s) 224, 312
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 155
HhaI GCGC 2 cut(s) 225, 313
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 134, 220
Hin6I GCGC 2 cut(s) 223, 311
HinP1I GCGC 2 cut(s) 223, 311
HinfI GANTC 5 cut(s) 38, 171, 286, 357, 415
Hpy188I TCNGA 2 cut(s) 7, 43
Hpy188III TCNNGA 2 cut(s) 131, 421
HpyAV CCTTC 3 cut(s) 38, 80, 376
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 30, 235
HpyCH4V TGCA 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 40, 399
HpySE526I ACGT 2 cut(s) 30, 235
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 134, 220
HspAI GCGC 2 cut(s) 223, 311
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 3 cut(s) 7, 276, 378
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 7 cut(s) 33, 46, 137, 159, 323, 341, 421
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 30, 235
MalI GATC 3 cut(s) 9, 278, 380
MboI GATC 3 cut(s) 7, 276, 378
MboII GAAGA 2 cut(s) 91, 278
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 2 cut(s) 23, 241
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 2 cut(s) 32, 280
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 2 cut(s) 108, 227
Msp20I TGGCCA 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 107
NdeII GATC 3 cut(s) 7, 276, 378
NlaIII CATG 2 cut(s) 134, 220
NspI RCATGY 1 cut(s) 220
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 216
PfeI GAWTC 3 cut(s) 171, 357, 415
PflMI CCANNNNNTGG 1 cut(s) 162
PleI GAGTC 2 cut(s) 32, 280
PpsI GAGTC 2 cut(s) 32, 280
PscI ACATGT 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 60
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 108, 227
Sau3AI GATC 3 cut(s) 7, 276, 378
SchI GAGTC 2 cut(s) 32, 280
SetI ASST 7 cut(s) 22, 33, 57, 72, 238, 368, 440
SfaNI GCATC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 23, 241
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 33, 238
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 23, 241
TfiI GAWTC 3 cut(s) 171, 357, 415
Tru1I TTAA 2 cut(s) 108, 227
Tru9I TTAA 2 cut(s) 108, 227
TspDTI ATGAA 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 107
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 220
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.