Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005246.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5762 .. 6022

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggcaagcagtgtctatagagctcatgttttagcaattccttatccagctcaaggctacataaacccgctcctccaattctccaaatgcctagcatcttctaagggcctcaaagtgaccctagccaataccatcttcatcgccaactctttgaacctacccaaatcggcaggctccgtccaacttgagaccatatcgatgggtatgatgacggcggctttgcgcgagctgaaagcatcgccgcctatctatctcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

86

Amino Acids

9.18

Weight (kDa)

9.73

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 45	1.4e-06	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	1 cut(s)	225
AciI	CCGC	3 cut(s)	68, 215, 242
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	3 cut(s)	23, 50, 229
AluI	AGCT	3 cut(s)	23, 50, 229
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	106
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	2 cut(s)	140, 193
BceAI	ACGGC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	92, 122
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	216, 242
BlsI	GCNGC	2 cut(s)	217, 243
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	2 cut(s)	104, 245
BpuEI	CTTGAG	2 cut(s)	36, 206
Bsa29I	ATCGAT	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	3 cut(s)	68, 215, 242
BspANI	GGCC	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	7, 172, 227
BstDEI	CTNAG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	197
BtgZI	GCGATG	2 cut(s)	124, 222
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	7, 172, 227
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	197
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	8 cut(s)	23, 50, 57, 108, 125, 174, 218, 229
CviKI_1	RGCY	8 cut(s)	23, 50, 57, 108, 125, 174, 218, 229
DdeI	CTNAG	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	1 cut(s)	29
FaiI	YATR	5 cut(s)	18, 27, 62, 194, 206
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	216, 242
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	216, 242
FspBI	CTAG	2 cut(s)	92, 122
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	216, 242
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	75, 179
LpnPI	CCDG	2 cut(s)	60, 156
LweI	GCATC	2 cut(s)	104, 245
MaeI	CTAG	2 cut(s)	92, 122
MaeIII	GTNAC	1 cut(s)	115
MbiI	CCGCTC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	90, 127
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	36, 77
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	2 cut(s)	83, 119
MslI	CAYNNNNRTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	225
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	217, 243
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	216, 242
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	4 cut(s)	25, 52, 159, 231
SfaNI	GCATC	2 cut(s)	104, 245
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	51, 185
SmoI	CTYRAG	2 cut(s)	51, 185
Sse9I	AATT	2 cut(s)	36, 77
SsiI	CCGC	3 cut(s)	68, 215, 242
SspMI	CTAG	2 cut(s)	92, 122
SstI	GAGCTC	1 cut(s)	25
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	36, 77
TauI	GCSGC	2 cut(s)	218, 244
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	16
XspI	CTAG	2 cut(s)	92, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.