Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005246.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28727 .. 29495

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgccttcgcctctccaatccaagcccaatctcaatcccaagaaattgttgtacggccaagaggtcgtcggcaagaggattaaggtgtactgggcgagtgataaggcctggtacgaaggctgtgtcaacttggtcaataaggagagtggcaagcacttacttcagtacgatggtgacgaagagactttggatttggccaccaagaaaattgaattgcttcaacagaccgtccagacctttaagctcttgcagcgaggtcattttcccactcccgaggctccggtggcggagggggacgaggaagacagtaatgatgatgatgattacggggatgaggattggggaaagagtgtggaagggaaggtgtttgagccagaggaggaagacaaggttatggaattggaggatgagcatgatgatgaggaagtgcccaagttcaaaggaaggcgcggcggttccggtggtaaactgaagaatattcgcacccacctcgccggaatcagacccacctcgcagccggttaatgggttctctccggaaccagtgagacaaccacaatgggggaagaagagcagagcagcagtcaaggctaagaaccagaccaaccctccggaagcctctcggaaatctacaacgccagcttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

215

Amino Acids

24.1

Weight (kDa)

5.3

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	450
AccIII	TCCGGA	2 cut(s)	535, 610
AciI	CCGC	3 cut(s)	287, 450, 453
AcoI	YGGCCR	2 cut(s)	55, 195
AcuI	CTGAAG	2 cut(s)	146, 491
AfaI	GTAC	4 cut(s)	53, 89, 113, 167
AfiI	CCNNNNNNNGG	2 cut(s)	524, 560
AgsI	TTSAA	3 cut(s)	212, 221, 439
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	244, 641
AluI	AGCT	2 cut(s)	244, 641
Alw26I	GTCTC	2 cut(s)	176, 541
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	2 cut(s)	535, 610
AoxI	GGCC	3 cut(s)	55, 105, 195
ApeKI	GCWGC	3 cut(s)	250, 514, 578
ArsI	GACNNNNNNTTYG	4 cut(s)	108, 140, 175, 207
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	309, 390
BbvI	GCAGC	3 cut(s)	262, 526, 590
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	176, 541
BisI	GCNGC	4 cut(s)	251, 451, 515, 579
BlsI	GCNGC	4 cut(s)	252, 452, 516, 580
Bme1390I	CCNGG	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	279, 457, 540
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	2 cut(s)	309, 390
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	4 cut(s)	280, 458, 535, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 560
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	95, 542
BseAI	TCCGGA	2 cut(s)	535, 610
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	337, 412
BseLI	CCNNNNNNNGG	2 cut(s)	524, 560
BseNI	ACTGG	2 cut(s)	95, 542
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	3 cut(s)	262, 526, 590
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	57, 107, 197
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	6 cut(s)	281, 459, 495, 518, 536, 611
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	524, 560
BsmAI	GTCTC	2 cut(s)	176, 541
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	57, 107, 197
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp13I	TCCGGA	2 cut(s)	535, 610
BspACI	CCGC	3 cut(s)	287, 450, 453
BspANI	GGCC	3 cut(s)	57, 107, 197
BspEI	TCCGGA	2 cut(s)	535, 610
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	279, 457, 540
BspQI	GCTCTTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	95, 542
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	229, 308
Bst6I	CTCTTC	2 cut(s)	174, 563
BstC8I	GCNNGC	3 cut(s)	152, 639, 643
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	337, 412
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	450
BstMAI	GTCTC	2 cut(s)	176, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 284, 587
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	262, 526, 590
BstV2I	GAAGAC	2 cut(s)	309, 390
BsuRI	GGCC	3 cut(s)	57, 107, 197
BtsCI	GGATG	2 cut(s)	337, 412
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	152, 639, 643
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	517
Csp6I	GTAC	4 cut(s)	52, 88, 112, 166
CviAII	CATG	1 cut(s)	413
CviQI	GTAC	4 cut(s)	52, 88, 112, 166
DdeI	CTNAG	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	55, 195
Eam1104I	CTCTTC	2 cut(s)	174, 563
EarI	CTCTTC	2 cut(s)	174, 563
EciI	GGCGGA	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	146, 491
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	416
FaiI	YATR	2 cut(s)	395, 414
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	251, 451, 515, 579
FokI	GGATG	2 cut(s)	344, 419
Fsp4HI	GCNGC	4 cut(s)	251, 451, 515, 579
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	4 cut(s)	251, 451, 515, 579
HaeIII	GGCC	3 cut(s)	57, 107, 197
HapII	CCGG	6 cut(s)	281, 459, 495, 518, 536, 611
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	6 cut(s)	281, 459, 495, 518, 536, 611
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	88, 127, 467
Hpy188I	TCNGA	2 cut(s)	503, 624
Hpy188III	TCNNGA	4 cut(s)	232, 272, 536, 611
Hpy8I	GTNNAC	3 cut(s)	88, 127, 467
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	15, 110, 350, 355, 438
HpyCH4III	ACNGT	2 cut(s)	229, 308
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 284, 587
HpyF3I	CTNAG	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	448
Kpn2I	TCCGGA	2 cut(s)	535, 610
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	3 cut(s)	262, 526, 590
MaeIII	GTNAC	1 cut(s)	173
MboII	GAAGA	6 cut(s)	191, 314, 395, 484, 577, 580
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	44, 207, 212, 398
MluNI	TGGCCA	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	197
MroI	TCCGGA	2 cut(s)	535, 610
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	3 cut(s)	81, 240, 522
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	6 cut(s)	281, 459, 495, 518, 536, 611
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	250, 284, 587
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	3 cut(s)	279, 457, 540
NmuCI	GTSAC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	252, 452, 516, 580
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	279, 457, 540
RsaI	GTAC	4 cut(s)	53, 89, 113, 167
RsaNI	GTAC	4 cut(s)	52, 88, 112, 166
RseI	CAYNNNNRTG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	81, 240, 522
SatI	GCNGC	4 cut(s)	251, 451, 515, 579
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	4 cut(s)	44, 207, 212, 398
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	287, 450, 453
SspI	AATATT	1 cut(s)	478
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	229, 308
TasI	AATT	4 cut(s)	44, 207, 212, 398
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	3 cut(s)	81, 240, 522
Tru9I	TTAA	3 cut(s)	81, 240, 522
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	250, 514, 578
Tsp45I	GTSAC	1 cut(s)	173
TspRI	CASTG	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.