Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005251.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3173 .. 3529

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggagatgcagcagctgctaagcatgggcttccccaccgacctcgccgccaaagccctcgccaccagcggtggcaactccgctctcaaagccaccgattggattctcaaccgcaattcctccataaccaccccactcccaccgccacctctcaacccaatttcgattgcttcttcctctcccaatccacaaattcacaatcccaagacaaacaagaaccagaagaacaatagtccaccccaacctcctaactccccaagcgccacaaacttctcgtcccggaaacccctccgcccactacctccaataaaccctcaaccgccgcggcccaccaccagcccttgtcggggcgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

118

Amino Acids

12.52

Weight (kDa)

11.05

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	3 - 38	3.8e-09	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	83
AccII	CGCG	1 cut(s)	325
AciI	CCGC	9 cut(s)	48, 69, 81, 112, 143, 292, 320, 323, 325
AcsI	RAATTY	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	99, 346, 347
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	10, 13, 16
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	2 cut(s)	263, 353
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	3, 22, 25
BcnI	CCSGG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	6 cut(s)	11, 14, 17, 48, 323, 326
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	6 cut(s)	12, 15, 18, 49, 324, 327
Bme1390I	CCNGG	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 346, 347
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	3 cut(s)	99, 346, 347
BseXI	GCAGC	3 cut(s)	3, 22, 25
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	99, 346, 347
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	328
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	9 cut(s)	48, 69, 81, 112, 143, 292, 320, 323, 325
BspANI	GGCC	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 353
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 53, 89
BstSCI	CCNGG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	3, 22, 25
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	323
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	2 cut(s)	263, 353
Cfr13I	GGNCC	1 cut(s)	327
Cfr42I	CCGCGG	1 cut(s)	326
CviAII	CATG	2 cut(s)	25, 354
CviJI	RGCY	6 cut(s)	16, 30, 56, 92, 328, 339
CviKI_1	RGCY	6 cut(s)	16, 30, 56, 92, 328, 339
DdeI	CTNAG	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	281
FaeI	CATG	2 cut(s)	28, 357
FaiI	YATR	3 cut(s)	26, 125, 355
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	24, 353
Fnu4HI	GCNGC	6 cut(s)	11, 14, 17, 48, 323, 326
Fsp4HI	GCNGC	6 cut(s)	11, 14, 17, 48, 323, 326
GlaI	GCGC	2 cut(s)	262, 352
GluI	GCNGC	6 cut(s)	11, 14, 17, 48, 323, 326
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	2 cut(s)	263, 353
Hin1II	CATG	2 cut(s)	28, 357
Hin6I	GCGC	2 cut(s)	261, 351
HinP1I	GCGC	2 cut(s)	261, 351
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 53, 89
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	28, 357
HspAI	GCGC	2 cut(s)	261, 351
KspI	CCGCGG	1 cut(s)	326
LpnPI	CCDG	4 cut(s)	79, 233, 293, 349
Lsp1109I	GCAGC	3 cut(s)	3, 22, 25
MbiI	CCGCTC	1 cut(s)	83
MboII	GAAGA	2 cut(s)	165, 235
MluCI	AATT	3 cut(s)	115, 159, 192
MnlI	CCTC	9 cut(s)	53, 68, 130, 159, 187, 255, 299, 312, 324
MspA1I	CMGCKG	3 cut(s)	16, 69, 325
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	16, 53, 89
NciI	CCSGG	1 cut(s)	280
NlaIII	CATG	2 cut(s)	28, 357
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	12, 15, 18, 49, 324, 327
PspPI	GGNCC	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	326
SatI	GCNGC	6 cut(s)	11, 14, 17, 48, 323, 326
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	5 cut(s)	18, 45, 151, 247, 304
Sfr303I	CCGCGG	1 cut(s)	326
SgrBI	CCGCGG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	115, 159, 192
SsiI	CCGC	9 cut(s)	48, 69, 81, 112, 143, 292, 320, 323, 325
StyD4I	CCNGG	1 cut(s)	278
TaqI	TCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	115, 159, 192
TauI	GCSGC	3 cut(s)	50, 325, 328
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	10, 13, 16
Van91I	CCANNNNNTGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.