Rmu_sc0005263.1_g000003

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005263.1
N/A
Physical Location & Seq
Forward (+)
5446 .. 6446
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
atggggaaaggaatatgggtgcactgggtcatgatgctgcttcacgtcgtcgccattctcattttcaccagaggctttctcctcacccgaaccgagctccctaactacagcaaatgcgacgacgtttcccaatccccctgcttgttcgaagaccaagaccacaagcctcacaaccagagccacccgaaccagaaggtttgctggagcaagcccgctattgatcgactcgtcatcatcgttttcgacgccctgaggtttgattttgtagctcccagtacttttttccaagagaagaagccatggatgaacaaattgcaacttatacaacagctggctgctacaaatgcatcgtcggctcggattttcaaggccattgctgatccaccaaccacaagtttgcagcgtttgaagggattgacaacgggtggactgccgacttttattgatgttgggaatagctttggtgctccagcaattgttgaagataacttgttacatcaggttgctttctctatcactcccttttgtgtcattatgaacaatgtattacatgcaatcaagcgtattatccatgaacattgcttacaactgcaacttgatcaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest

Protein Analysis

202

Amino Acids

22.86

Weight (kDa)

8.63

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 3 cut(s) 367, 409, 482
AjiI CACGTC 1 cut(s) 46
AluBI AGCT 4 cut(s) 97, 269, 331, 459
AluI AGCT 4 cut(s) 97, 269, 331, 459
Alw21I GWGCWC 3 cut(s) 24, 99, 469
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 1 cut(s) 374
AoxI GGCC 1 cut(s) 369
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 37, 335, 400
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AsuHPI GGTGA 2 cut(s) 58, 76
AsuII TTCGAA 1 cut(s) 147
AxyI CCTNAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 3 cut(s) 24, 99, 469
BbvI GCAGC 3 cut(s) 24, 322, 412
BclI TGATCA 1 cut(s) 598
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 38, 336, 401
BlsI GCNGC 3 cut(s) 39, 337, 402
BmcAI AGTACT 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 46
BmrI ACTGGG 2 cut(s) 34, 267
BmsI GCATC 2 cut(s) 24, 356
BmuI ACTGGG 2 cut(s) 34, 267
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 2 cut(s) 223, 453
Bpu14I TTCGAA 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 29, 273
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 372, 577
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 309
BseMI GCAATG 2 cut(s) 372, 577
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 29, 273
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 3 cut(s) 24, 322, 412
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 3 cut(s) 24, 99, 469
BsnI GGCC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 3 cut(s) 24, 99, 469
Bsp143I GATC 3 cut(s) 220, 379, 598
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 372, 577
BsrI ACTGG 2 cut(s) 29, 273
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 3 cut(s) 220, 379, 598
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 209, 213, 333
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 3 cut(s) 223, 382, 601
BstMBI GATC 3 cut(s) 220, 379, 598
BstMWI GCNNNNNNNGC 2 cut(s) 344, 353
BstNSI RCATGY 1 cut(s) 554
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 24, 322, 412
BstV2I GAAGAC 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 251
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 299
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 209, 213, 333
CciI TCATGA 1 cut(s) 30
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 276
CviAII CATG 4 cut(s) 31, 300, 551, 572
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 222, 381, 600
DpnII GATC 3 cut(s) 220, 379, 598
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 299
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 4 cut(s) 34, 303, 554, 575
FaiI YATR 7 cut(s) 16, 32, 301, 323, 536, 552, 573
FatI CATG 4 cut(s) 30, 299, 550, 571
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 3 cut(s) 38, 336, 401
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 38, 336, 401
GluI GCNGC 3 cut(s) 38, 336, 401
GsuI CTGGAG 2 cut(s) 223, 453
HaeIII GGCC 1 cut(s) 371
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 4 cut(s) 34, 303, 554, 575
HinfI GANTC 1 cut(s) 225
HphI GGTGA 2 cut(s) 58, 76
Hpy166II GTNNAC 2 cut(s) 22, 428
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 22, 428
Hpy99I CGWCG 6 cut(s) 50, 53, 122, 125, 248, 355
HpyAV CCTTC 2 cut(s) 187, 403
HpyCH4IV ACGT 2 cut(s) 45, 123
HpyCH4V TGCA 6 cut(s) 22, 316, 347, 400, 554, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 353
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 2 cut(s) 45, 123
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 4 cut(s) 34, 303, 554, 575
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 220, 379, 598
LmnI GCTCC 4 cut(s) 102, 204, 274, 472
Lsp1109I GCAGC 3 cut(s) 24, 322, 412
LweI GCATC 2 cut(s) 24, 356
MaeII ACGT 2 cut(s) 45, 123
MaeIII GTNAC 1 cut(s) 492
MalI GATC 3 cut(s) 222, 381, 600
MboI GATC 3 cut(s) 220, 379, 598
MboII GAAGA 3 cut(s) 161, 304, 494
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 24, 99, 469
MluCI AATT 2 cut(s) 311, 474
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 4 cut(s) 65, 92, 177, 246
Mph1103I ATGCAT 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 331
MunI CAATTG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 344, 353
NcoI CCATGG 1 cut(s) 299
NdeII GATC 3 cut(s) 220, 379, 598
NlaIII CATG 4 cut(s) 34, 303, 554, 575
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 147
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PkrI GCNGC 3 cut(s) 39, 337, 402
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 99
PsrI GAACNNNNNNTAC 2 cut(s) 567, 599
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 99
SatI GCNGC 3 cut(s) 38, 336, 401
Sau3AI GATC 3 cut(s) 220, 379, 598
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 219
SduI GDGCHC 3 cut(s) 24, 99, 469
SetI ASST 9 cut(s) 48, 99, 126, 198, 257, 271, 333, 461, 504
SfaNI GCATC 2 cut(s) 24, 356
SfcI CTRYAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 147
Sse9I AATT 2 cut(s) 311, 474
SsiI CCGC 1 cut(s) 213
SstI GAGCTC 1 cut(s) 99
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 2 cut(s) 48, 126
TaqI TCGA 3 cut(s) 147, 223, 243
TasI AATT 2 cut(s) 311, 474
TatI WGTACW 1 cut(s) 275
TscAI CASTG 1 cut(s) 29
TseI GCWGC 3 cut(s) 37, 335, 400
TspDTI ATGAA 3 cut(s) 320, 551, 588
TspRI CASTG 1 cut(s) 29
VneI GTGCAC 1 cut(s) 20
XceI RCATGY 1 cut(s) 554
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.