Rmu_sc0005264.1_g000002

expansin-A9-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005264.1
N/A
Physical Location & Seq
Forward (+)
7786 .. 8296
511 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atggcaccagtctttcacgccctcttgggttcattactactcgttcttcctttgctgcctcattatgttcatgcaaatgcacggaaaaacgttggtaaatatacaggggctggttcaggcagtcatgacaagcttcatgtagtgggtcgttcccacaggccaaggttcactgccggcccttggaagcatgctcacgccacattctacgaaggaggctccggtacatttgggggagcttgcggctacgaagatgtaattaaagaaggatatgggttggacacagcagcattgagcaatgcattgttcaacaatgggcaggcttgtggttcatgttatgacgcagtcatgacaagcttcatgtag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

12.7

Weight (kDa)

8.5

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 90
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 3 cut(s) 133, 236, 354
AluI AGCT 3 cut(s) 133, 236, 354
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 158, 175
ApeKI GCWGC 2 cut(s) 55, 284
AspS9I GGNCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 42, 296
BisI GCNGC 3 cut(s) 56, 241, 285
BlsI GCNGC 3 cut(s) 57, 242, 286
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 6, 217
BsaJI CCNNGG 2 cut(s) 161, 179
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 161, 179
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 42, 296
BshFI GGCC 2 cut(s) 160, 177
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 174, 219
BslI CCNNNNNNNGG 1 cut(s) 180
BsnI GGCC 2 cut(s) 160, 177
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 160, 177
BspHI TCATGA 2 cut(s) 124, 345
BspLI GGNNCC 2 cut(s) 6, 217
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 161, 179
BssT1I CCWWGG 2 cut(s) 161, 179
BstC8I GCNNGC 4 cut(s) 175, 189, 238, 318
BstNSI RCATGY 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 42, 296
BsuRI GGCC 2 cut(s) 160, 177
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 4 cut(s) 175, 189, 238, 318
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 2 cut(s) 124, 345
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 222
CviAII CATG 7 cut(s) 71, 125, 137, 188, 330, 346, 358
CviJI RGCY 9 cut(s) 110, 133, 160, 177, 216, 236, 243, 320, 354
CviKI_1 RGCY 9 cut(s) 110, 133, 160, 177, 216, 236, 243, 320, 354
CviQI GTAC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 161, 179
EcoT14I CCWWGG 2 cut(s) 161, 179
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 161, 179
FaeI CATG 7 cut(s) 74, 128, 140, 191, 333, 349, 361
FatI CATG 7 cut(s) 70, 124, 136, 187, 329, 345, 357
Fnu4HI GCNGC 3 cut(s) 56, 241, 285
Fsp4HI GCNGC 3 cut(s) 56, 241, 285
GluI GCNGC 3 cut(s) 56, 241, 285
HaeIII GGCC 2 cut(s) 160, 177
HapII CCGG 2 cut(s) 174, 219
HgaI GACGC 1 cut(s) 347
Hin1II CATG 7 cut(s) 74, 128, 140, 191, 333, 349, 361
HindIII AAGCTT 2 cut(s) 131, 352
HpaII CCGG 2 cut(s) 174, 219
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 125, 346
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 203, 257
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 74, 80, 299
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 7 cut(s) 74, 128, 140, 191, 333, 349, 361
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 221, 233
LpnPI CCDG 8 cut(s) 21, 90, 96, 102, 142, 187, 232, 302
Lsp1109I GCAGC 2 cut(s) 42, 296
MaeII ACGT 1 cut(s) 90
MboII GAAGA 2 cut(s) 38, 260
MluCI AATT 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 3 cut(s) 32, 69, 206
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 2 cut(s) 174, 219
NaeI GCCGGC 1 cut(s) 175
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 7 cut(s) 74, 128, 140, 191, 333, 349, 361
NlaIV GGNNCC 2 cut(s) 6, 217
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 191
PaeI GCATGC 1 cut(s) 191
PagI TCATGA 2 cut(s) 124, 345
PdiI GCCGGC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 57, 242, 286
Psp1406I AACGTT 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 6, 217
PspPI GGNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 3 cut(s) 56, 241, 285
Sau96I GGNCC 1 cut(s) 176
SetI ASST 5 cut(s) 93, 135, 167, 238, 356
SmiMI CAYNNNNRTG 1 cut(s) 75
SphI GCATGC 1 cut(s) 191
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 240
StyI CCWWGG 2 cut(s) 161, 179
TaiI ACGT 1 cut(s) 93
TasI AATT 1 cut(s) 255
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 175
TseI GCWGC 2 cut(s) 55, 284
TspDTI ATGAA 5 cut(s) 21, 59, 125, 318, 346
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 341
XceI RCATGY 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.